HsaINT0167088 @ hg19
Intron Retention
Gene
ENSG00000146426 | TIAM2
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:11806]
Coordinates
chr6:155575553-155578857:+
Coord C1 exon
chr6:155575553-155575707
Coord A exon
chr6:155575708-155577617
Coord C2 exon
chr6:155577618-155578857
Length
1910 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
3' ss Seq
ATGTGTTTTTCTCACTGTAGCTT
3' ss Score
8.95
Exon sequences
Seq C1 exon
TGACAGTGAAAGCAAAACCAACATTGTTAAGGTGATTCGTTCTATTCTGAGGGAGAACTTCAGGCGTCACATAAAGTGTGAATTACCACTGGAGAAAACGTGTAAGGATCGCCTGGTACCTCTTAAGAACCGAGTTCCTGTTTCGGCCAAATTAG
Seq A exon
GTGAGAATTTTGCTAGCCTTGTGTTTATTCAACAAAATATTATGAGCTTCTGAAAAGGATATATGCTCTTGTAACATAGCTGTGACTTTTCACTTTGTAAGTCATCGAGGTACCTTTATCTCCTTTTAAGAAACCTAAACATGCCTCTTGCTCCCAGACGTTCTACTGTAAAATACAGCCACCCCCAACCCCCAGTCCCTTGTCTTCCTACCCGCTGACATAGTCCAAATGTACGATTTTGTTTCTTCCACTAAGATGTGCATGGGTCCAGGGACTTTGTTTTCCTCACTGCTGTATTCCCAGTGCTCAGAACAGTGCCAGGCATCCTGAAGGTCAATGCTGAATGAAGATCAAGAACCTTACACAGAGGGTCTCCACCTTCTGATGGTTCAACCTACAATTTTTCGACTTTACCGTGGTGTGAAAGTGACACACATTCAGTAGAAATCGTACTTCGAGTACCCAGACAACCATTCTGTTTTTTGCTTCTAGTGCAGCATTCAATACATTTCATGAGATACTCAACACTTAATTATAAAACAGGCCTTGTGTTCTGCCCAACCATAGGCTAATGTAAGTGTTCTGAGCACACTGAAGGCAGGCTAGGCTAAGCCGCAGTGGTTAGTAGGTACATTAAATGCATTCTCGACTTTCCATATTATCAACTTAACAATGGGTTGATTGGGATGTAATGCCATCTAAGTTAAGGGGCCTCTTATACTCGTTCTTAATCGATAGGGCACCAAGTAAGCATTTCAAATCACGTTGTTCTTTCTGCTTGTTTCTAAAATTTCAGCTTAAGTTTTCAGAACCTTATTTCTACATTAACTATTTTGTTATTATCTTTCTTGTTTTTAGGCTTAGAAAATGTAAAACTTCGCTTTTTCATGTCAAATCAGTGTGACCTCTTCAGATCTACCACATATTTACTATTTTCTCCATTGTCAAAATAAACTGGCCATCAAAATAACATGCTGTTATTACTTTGTAGAAACACCAAAACTGAGAACTCCCTTCCTTCTTTCAATCCAAGAGAACAGAACTACACACACACACACACACACCTATAACATAAAATTTCAGAAAGTTGTTTTGAAATTCCAGCAGAGACAGTTCTCATATGAGAGATAAAGAGCATTTTCTAGGCTGGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCCCTTGAGCTCTTGAGAACAGGAGTTTGAGACCAACCTGGGCAACATGGCAAAACCCCATCTCTACAAAAAAAATATAAAAATTAGCCAGGCGTGATCATGCGCACCTATAGTCCCAACTACTCAGGAGGCTGAGATGGGAGGATCACTTGAGCCCAGGAGGCGGAGGTTGCAGTGAGCAGAGATCACACCACTGCACTCCAGCCTGGGTGGCAGAGCAAGACACTGTCTTTAAAAAAAAAGGGGGGGGGAGGGGCATTTTCTACTTTTAATTGAGCAGCAAGGGAAATCCACAAGGTGAGAAGATGCATAGGAATATGGTGTGATCTTCATGATCAAATTACAAAGCACCTTAGTGAAAGAAAGGAGCCTAGATTTATTATTACCAATTAACTTTTCAACTTACTCCTTGGCAAAATAAGAATCTTAGCCCATGTAGTAGTTTCTAGTGTCTAGTTCTATTTACATAATTGAGCTCTGGTAATCTAAAAATGCTGAATTGCCTAACTTACAACTGTAAACCTAAGTCAAAAATGTCCATGTTTTCAGTAGCTACATTTTTGCCTAATTACCAGGATAGTTGCTAACTGAAGTCATATCATAAAATAAAATCTTAATGTTAAATCTTACACAAGCTTTGAGGCAAACATTACACATTGTGTAACCTGTTTCTGTATCACAGCGAAATGTGTTTTTCTCACTGTAG
Seq C2 exon
CTTCATCCAGGTCTTTAAAAGTCCTGAAGAATTCCTCCAGCAACGAGTGGACCGGTGAGACTGGCAAGGGAACCTTGCTGGACTCTGACGAGGGCAGCTTGAGCAGCGGCACCCAGAGCAGCGGCTGCCCCACGGCTGAGGGCAGGCAGGACTCCAAGAGCACTTCTCCCGGGAAATACCCACACCCCGGCTTGGCAGATTTTGCCGACAATCTCATCAAAGAGAGTGACATCCTGAGCGATGAAGATGATGACCACCGTCAGACTGTGAAGCAGGGCAGCCCTACTAAAGACATCGAAATTCAGTTCCAGAGACTGAGGATTTCCGAGGACCCAGACGTTCACCCCGAGGCTGAGCAGCAGCCTGGCCCGGAGTCGGGTGAGGGTCAGAAAGGAGGAGAGCAGCCCAAACTGGTCCGGGGGCACTTCTGCCCCATTAAACGAAAAGCCAACAGCACCAAGAGGGACAGAGGAACTTTGCTCAAGGCGCAGATCCGTCACCAGTCCCTTGACAGTCAGTCTGAAAATGCCACCATCGACCTAAATTCTGTTCTAGAGCGAGAATTCAGTGTCCAGAGTTTAACATCTGTTGTCAGTGAGGAGTGTTTTTATGAAACAGAGAGCCACGGAAAATCATAGTATGATTCAATCCAGATATGGGTTAAATTCCTCATTTTACTTTTAAACTGGTGGTAAAGTGGAAATTGCAAAAAAAAAAAAAAAAAAAAACTGTTCATTCCTGGGTTTTGTGCAGTATACATTTTCCCACAAAATGGTTGTAAAGATTTAAGTTATTTTAATTTATTGTGGATCAGAAACCTAGATGAAACTGGTCAGAATCTGTAAATTACTTAGTTTATATCCACTTTGAGCAGGTATCAAATGATTTAGGATCCTTAAAATTACATTCTAATAATTAAGTTATGTGGAAAAAGTAAGGCTGGGGAAGTCGTGATTAATAGTTTTCAAAGGGCCATTTTTTAAAATCCTCTGGGCATTTTCTTTCAGCTGTTTGTTAGTTTTTGCTTTATTTAAAGCATATTTAAGTTATTTTAATGTGGTTTAGGGGCAAAATGTGCAGATACTTCATTTTTGTAAGATAGATTGTAATAGATGCTGTTTATACTAAACATGTCATAACTATCTATACAGTATATATTAAAAGAAAGCTTGTACTGTATCTTATTTGATGATATTTATTTTCTCTGCCAAGCTGTATAGTAAAAGGAAAATAAGTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146426-TIAM2:NM_001010927:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.830
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAGGGAGAACTTCAGGCG
R:
TCGCTCAGGATGTCACTCTCT
Band lengths:
351-2261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)