GgaINT0085352 @ galGal3
Intron Retention
Gene
ENSGALG00000013645 | TIAM2
Description
NA
Coordinates
chr3:52490961-52492548:+
Coord C1 exon
chr3:52490961-52491115
Coord A exon
chr3:52491116-52491907
Coord C2 exon
chr3:52491908-52492548
Length
792 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
AACTGCCTTCTTCTGCACAGCTT
3' ss Score
6.5
Exon sequences
Seq C1 exon
CGACTGCGAGAACAAGACTAACATCGTGAAGGTGATCCGTTCTATCTTGCGGGAGAATTTCAGACGTCACATAAAATGTGAGCTGCCTCTGGACAAAACCTGTAAAGATCGCCTCATTCCACTGAAGAACCGTGTGCCTGCGACAGCTAAACTGG
Seq A exon
GTAAGAAACAGGTTCTCAAAGTGAAAAATGGAATCCAGAGCTGGCAGATGATTCACAGTTGTTAAAGTGGCTGTATGGTGTCATGTGCCAGACCCACAAATTCCATTTCTTTTTCAGGTTGATTAGTTGCAGCAGTTTCTCCACAACTCGGTGTATGGCAAGGGCTAGAGGAGATAAGCAAGCTTGCTGTCCCCCACTGTATTGTCCTGTTTGATTTGTCATTAGCTGTCTTAAGGGAAGACTTAGTAAGGCCCCATTTTGTTGGTTAGAAACAGACTCCCTTTGGCATGCAGAATACTGCGTTCTTTCCTCTGGGTTATCTCTAGTGTCTCAGCCCTGCTAACATTTAAAGCTGAAACAAATAACAAAAGACAGGGCTCTTGTTTGTTTCTTTCCATGTTCTCTTAATCTGCATCCCAGCACATACCCTAATTAATTAAGCACAGGCTTCAGGCTTTTTATCTACTAGTTGGCTACTAGTATTTCTAGTTCTCTATGTGTTCAGTTGACCAAAATCCCCATTACATGGCAGGATCAGGGACAGTTCAACTCATGCCTACAACTTGGCCCTCTAGTGCTTGAGGTATATATGCCTGCACAGAAAGGCAAGCATATAACTCTGGAGGAGGTAAGACTGAAAAATCTGATGCTTAACTACACTGTTGGTACTAGAATGCTGACACACCTGACCTTGAATGAGACTATGTACACTGTGACTGGAAGTGGGTTGTTAAGCCAGACAGTATAACCAGATGTTTGGATGAGAAGATAAAACTGCCTTCTTCTGCACAG
Seq C2 exon
CTTCCACCAGGTCCTTGAAGGTACTGAAGAATTCACCCAGCAGTGAGTGGAACGGTGACCAGGGGAAAGGCACCTTCCAGGACTCTGATGACTGCAGCCTGAGCAGCAGCACCCAGAGCAGCAGCTGCAACACCACAGAGAGCATACAGGAGCCCAAAACTTCATCCCCCGATCAACACGTACAGAGCTGTTCCTCCGACTTTTCCAATGCTCTTGTTAAAGAATCCGATATTCTTAGTGATGATGATGATGACGACTATCAGAGCCTAAAGAAGGGCAGCCCTACTAAAGACATTGAAATTCAGTTCCAGCGGCTGAAGATTTCAGAGGAACCCAGTACTGACTCTGAACGAGATCAAGCTGCAGAAAAGGAGGAAGGAGATGGTTTCAAGATGGGAGAACATCCAAAGCTGATACGTGGCCATTTCTGCCCAGTGAAGCGAAAAGTAAACAGTACGAAGCGTAACAGGGGAACTTTAACGGCAATGCAGGAACGTCACCAGTCTCTTGACAGCCACTCTGATGCTGCAAACTTGGACCTGAACTCTATTTTGGAGAGGGAATTTAGCGTCCAGAGTTTAACATCTGTAGTTAACGAGGACTGTTTTTATGAAGCTGTGGAGAGACATGGAAAGTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013645:ENSGALT00000022192:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.638
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTGCCTCTGGACAAAAC
R:
GCTGCCCTTCTTTAGGCTCTG
Band lengths:
358-1150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]