RnoINT0150941 @ rn6
Intron Retention
Gene
ENSRNOG00000016728 | Tiam2
Description
T-cell lymphoma invasion and metastasis 2 [Source:RGD Symbol;Acc:2324148]
Coordinates
chr1:44431034-44433193:+
Coord C1 exon
chr1:44431034-44431188
Coord A exon
chr1:44431189-44432378
Coord C2 exon
chr1:44432379-44433193
Length
1190 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
3' ss Seq
TGTGCTTTTTTTCTTGGTAGCCT
3' ss Score
7.7
Exon sequences
Seq C1 exon
TGACAGCGAGAGCAAAACCAGCATCGTTAAGGTGATCCGTTCTATTCTGAGAGAGAACTTCAGGCGCCACATAAAGTGTGAGTTACCAATGGAGAAGACATGTAAGGACCGGCTGGTACCTCTTAAGAACCGAGTTCCTGTTTCAGCCAAATTAG
Seq A exon
GTGAGAATTTTGTCAGCCCTGTGTTCCAATGAAGAAAACATCATGAGGTTGTATACAGCTATAACTGAATCCATTGATGATCAAGGGCCTTTGCTTCCTCTGAGGGTTCCTAGTCCTAGGCTTCCTGAAAGTCAGTACTTACTTTGGATCACAAGACTGGATCTACTCACTCTTATTTGATCACTGATAGCAGGTCATCAGCCTAGATTATACTGTTCTTAATCTTTTTGCCTACTTTCCAAATTTAGCATTTTGTTTCTTCTTTAAAATTTAATTTTTTCTAGTGGTGCTAGGGATTGAACTCAGGACCTTTGGATAGATGCTAGGTAGGCCTTCTACCACTGAGCTAGATCCCTAAATTCTTTGTAATCTTATAGGGCACACACAGTCTCCTGCTCCCTTCTCCCCACTCACCACACAATGCAATCTTTCCACATCTGCATATATTCTATTGTCAAGATAGTCTGTGAACTAATATGGGCTAATGGCTTACAGAAGCACCCAAACTAAGAATTCCCTTTCCAACTCTAGAGAACACACTCAATCACCACTCCACCACCCCACACGATTAAATGCTCACAATGTTAATTCTCTTAATGATTATAAATTCCAGCAGAGAGGTAAGAACATTTTTAGGTTCTAACGGAGCATCTAGGGACATAAATAGGGAAGCTGTGTGTAGAGATGAGGTATATTTTCAGATTACGAGGTAAAAGAAATGTAACCTAAATTTTTATTAGTGATTAACTATTCAATTTACTCATTGGCAAACTAGTAACTCTAGCCCTTATAGGAGTCGGTACTTTATTGTTCTATCTATATGATAAAGCTCTGGGAATCTAAAAAACGGCCGAATCCCAACTTCATTTCAGACACGCCTGGGGATATGTCTAGGTGGGCACAGTGCTTACCAGCATTCATCAAACTCCTGATCTCCAGCATGCATAAAGCCAGGCGAGCATAGCACTCAAGAGTAGAAGCTAGGTTTAAAACTGTCCTCAGCTATATAAGAGACCCAACAACAAAACCCTAAAGATATCAGTAAGTCCATGGTTTGACATAACTACGTGGTTTTGCCACCTACTCCCCATAATAAAATCTTCATGTAAATGTCACCCCTGAGGCCCTAACTCTACATTGTAGACTCTGTTTCTGTGTCATATGGAGAAATGTGCTTTTTTTCTTGGTAG
Seq C2 exon
CCTCATCCAGGTCTTTGAAGGTCCTCAGAACATCCTCCAGCAGCGAGTGGCCCAGCGACCCCAGCAAGGGCAACTCACTGGACTCGGATGAGTGCAGCCTGAGCAGTGGCACCCAGAGCAGTGGCTGCCCAGTAGCTGAGAGCAGACAAGACTGTAAGAGCACCGTGCTGGAGAAAGACGCTCATGAGGTCCTGGCAGAGTTTCCAGATGGTCTCATCAAAGAAAGCGACATTCTAAGTGATGAAGAGGAGGACTTCCACCACCCTCTGAAACAGGGCAGCCCTACTAAGGACATTGAGCTTCAGTTCCAGAGACTGCGAATCTCTGAGGAACCCGATATGCACTCAACTGGGCAGCAGCCGCCTCTCACAGGGCCGGGTGAACAGCCCAAGCTGGTCAGGGGCCACTTTTGCCCCATTAAGCGTAAAGCAAACAGCACTAAGAGGGGCCGAGGAACTTTGCTCAAGGCGCAGACACGTCACCAGTCCCTGGACAGCCACCCGGAAACCGCCAGCATCGATCTAAATTTGGTTCTGGAGAGAGAATTCAGTGTCCAGAGCTTAACTTCAGTTGTTAATGAGGAGTGTTTTTATGAAACACAGAGCCATGGCAAATCCTAGTGTGATCTGTATGGCGTGGTTACAATGCTCATTTTCAAATTGGTGGAAAATAGAAACTGCAGGAAAACTGTTCATGTTTGGGTTTTATGCAGTATATAATTTTCCACAAAACCTGTAAAGATTTAAGTTATTTTAATTTATTGTGAATCAGAAAACTAGATTTAGTTGGTCAGAATCTGTAAATTACTAGCTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016728:ENSRNOT00000065386:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.636
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGAGTTCCTGTTTCAGCC
R:
CGCAGTCTCTGGAACTGAAGC
Band lengths:
347-1537
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]