HsaINT1044256 @ hg38
Intron Retention
Gene
ENSG00000146426 | TIAM2
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:HGNC:11806]
Coordinates
chr6:155254419-155257723:+
Coord C1 exon
chr6:155254419-155254573
Coord A exon
chr6:155254574-155256483
Coord C2 exon
chr6:155256484-155257723
Length
1910 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
3' ss Seq
ATGTGTTTTTCTCACTGTAGCTT
3' ss Score
8.95
Exon sequences
Seq C1 exon
TGACAGTGAAAGCAAAACCAACATTGTTAAGGTGATTCGTTCTATTCTGAGGGAGAACTTCAGGCGTCACATAAAGTGTGAATTACCACTGGAGAAAACGTGTAAGGATCGCCTGGTACCTCTTAAGAACCGAGTTCCTGTTTCGGCCAAATTAG
Seq A exon
GTGAGAATTTTGCTAGCCTTGTGTTTATTCAACAAAATATTATGAGCTTCTGAAAAGGATATATGCTCTTGTAACATAGCTGTGACTTTTCACTTTGTAAGTCATCGAGGTACCTTTATCTCCTTTTAAGAAACCTAAACATGCCTCTTGCTCCCAGACGTTCTACTGTAAAATACAGCCACCCCCAACCCCCAGTCCCTTGTCTTCCTACCCGCTGACATAGTCCAAATGTACGATTTTGTTTCTTCCACTAAGATGTGCATGGGTCCAGGGACTTTGTTTTCCTCACTGCTGTATTCCCAGTGCTCAGAACAGTGCCAGGCATCCTGAAGGTCAATGCTGAATGAAGATCAAGAACCTTACACAGAGGGTCTCCACCTTCTGATGGTTCAACCTACAATTTTTCGACTTTACCGTGGTGTGAAAGTGACACACATTCAGTAGAAATCGTACTTCGAGTACCCAGACAACCATTCTGTTTTTTGCTTCTAGTGCAGCATTCAATACATTTCATGAGATACTCAACACTTAATTATAAAACAGGCCTTGTGTTCTGCCCAACCATAGGCTAATGTAAGTGTTCTGAGCACACTGAAGGCAGGCTAGGCTAAGCCGCAGTGGTTAGTAGGTACATTAAATGCATTCTCGACTTTCCATATTATCAACTTAACAATGGGTTGATTGGGATGTAATGCCATCTAAGTTAAGGGGCCTCTTATACTCGTTCTTAATCGATAGGGCACCAAGTAAGCATTTCAAATCACGTTGTTCTTTCTGCTTGTTTCTAAAATTTCAGCTTAAGTTTTCAGAACCTTATTTCTACATTAACTATTTTGTTATTATCTTTCTTGTTTTTAGGCTTAGAAAATGTAAAACTTCGCTTTTTCATGTCAAATCAGTGTGACCTCTTCAGATCTACCACATATTTACTATTTTCTCCATTGTCAAAATAAACTGGCCATCAAAATAACATGCTGTTATTACTTTGTAGAAACACCAAAACTGAGAACTCCCTTCCTTCTTTCAATCCAAGAGAACAGAACTACACACACACACACACACACCTATAACATAAAATTTCAGAAAGTTGTTTTGAAATTCCAGCAGAGACAGTTCTCATATGAGAGATAAAGAGCATTTTCTAGGCTGGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCCCTTGAGCTCTTGAGAACAGGAGTTTGAGACCAACCTGGGCAACATGGCAAAACCCCATCTCTACAAAAAAAATATAAAAATTAGCCAGGCGTGATCATGCGCACCTATAGTCCCAACTACTCAGGAGGCTGAGATGGGAGGATCACTTGAGCCCAGGAGGCGGAGGTTGCAGTGAGCAGAGATCACACCACTGCACTCCAGCCTGGGTGGCAGAGCAAGACACTGTCTTTAAAAAAAAAGGGGGGGGGAGGGGCATTTTCTACTTTTAATTGAGCAGCAAGGGAAATCCACAAGGTGAGAAGATGCATAGGAATATGGTGTGATCTTCATGATCAAATTACAAAGCACCTTAGTGAAAGAAAGGAGCCTAGATTTATTATTACCAATTAACTTTTCAACTTACTCCTTGGCAAAATAAGAATCTTAGCCCATGTAGTAGTTTCTAGTGTCTAGTTCTATTTACATAATTGAGCTCTGGTAATCTAAAAATGCTGAATTGCCTAACTTACAACTGTAAACCTAAGTCAAAAATGTCCATGTTTTCAGTAGCTACATTTTTGCCTAATTACCAGGATAGTTGCTAACTGAAGTCATATCATAAAATAAAATCTTAATGTTAAATCTTACACAAGCTTTGAGGCAAACATTACACATTGTGTAACCTGTTTCTGTATCACAGCGAAATGTGTTTTTCTCACTGTAG
Seq C2 exon
CTTCATCCAGGTCTTTAAAAGTCCTGAAGAATTCCTCCAGCAACGAGTGGACCGGTGAGACTGGCAAGGGAACCTTGCTGGACTCTGACGAGGGCAGCTTGAGCAGCGGCACCCAGAGCAGCGGCTGCCCCACGGCTGAGGGCAGGCAGGACTCCAAGAGCACTTCTCCCGGGAAATACCCACACCCCGGCTTGGCAGATTTTGCCGACAATCTCATCAAAGAGAGTGACATCCTGAGCGATGAAGATGATGACCACCGTCAGACTGTGAAGCAGGGCAGCCCTACTAAAGACATCGAAATTCAGTTCCAGAGACTGAGGATTTCCGAGGACCCAGACGTTCACCCCGAGGCTGAGCAGCAGCCTGGCCCGGAGTCGGGTGAGGGTCAGAAAGGAGGAGAGCAGCCCAAACTGGTCCGGGGGCACTTCTGCCCCATTAAACGAAAAGCCAACAGCACCAAGAGGGACAGAGGAACTTTGCTCAAGGCGCAGATCCGTCACCAGTCCCTTGACAGTCAGTCTGAAAATGCCACCATCGACCTAAATTCTGTTCTAGAGCGAGAATTCAGTGTCCAGAGTTTAACATCTGTTGTCAGTGAGGAGTGTTTTTATGAAACAGAGAGCCACGGAAAATCATAGTATGATTCAATCCAGATATGGGTTAAATTCCTCATTTTACTTTTAAACTGGTGGTAAAGTGGAAATTGCAAAAAAAAAAAAAAAAAAAAACTGTTCATTCCTGGGTTTTGTGCAGTATACATTTTCCCACAAAATGGTTGTAAAGATTTAAGTTATTTTAATTTATTGTGGATCAGAAACCTAGATGAAACTGGTCAGAATCTGTAAATTACTTAGTTTATATCCACTTTGAGCAGGTATCAAATGATTTAGGATCCTTAAAATTACATTCTAATAATTAAGTTATGTGGAAAAAGTAAGGCTGGGGAAGTCGTGATTAATAGTTTTCAAAGGGCCATTTTTTAAAATCCTCTGGGCATTTTCTTTCAGCTGTTTGTTAGTTTTTGCTTTATTTAAAGCATATTTAAGTTATTTTAATGTGGTTTAGGGGCAAAATGTGCAGATACTTCATTTTTGTAAGATAGATTGTAATAGATGCTGTTTATACTAAACATGTCATAACTATCTATACAGTATATATTAAAAGAAAGCTTGTACTGTATCTTATTTGATGATATTTATTTTCTCTGCCAAGCTGTATAGTAAAAGGAAAATAAGTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146426:ENST00000318981:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.830
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAGGGAGAACTTCAGGCG
R:
TCGCTCAGGATGTCACTCTCT
Band lengths:
351-2261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains