MmuINT0160132 @ mm9
Intron Retention
Gene
ENSMUSG00000023800 | Tiam2
Description
T cell lymphoma invasion and metastasis 2 [Source:MGI Symbol;Acc:MGI:1344338]
Coordinates
chr17:3516563-3519397:+
Coord C1 exon
chr17:3516563-3516717
Coord A exon
chr17:3516718-3518111
Coord C2 exon
chr17:3518112-3519397
Length
1394 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
3' ss Seq
TGTGCTTTTCTTCTTGGTAGCCT
3' ss Score
7.42
Exon sequences
Seq C1 exon
TGACAGCGAGAACAAAACCAGCATTGTTAAGGTGATTCGTTCTATTCTGAGAGAGAACTTCCGGCGCCACATAAAGTGTGAGCTGCCACTGGAGAAGACGTGTAAGGACCGGCTAGTACCTCTTAAGAACCGAGTTCCTGTTTCAGCCAAATTAG
Seq A exon
GTGAGAATTTTGTCAGCCCTGTGCTTTAATGAAGAAAACACCATGAGGTTGTACTACAGCTATAACTAAATCTGTCAATGATCGAGAGTAACTTCACTTCCTCTTAAGAGAACCGTGCCTTTTGCCCTGTCGTCCTCTCATGAATAGGCCACCTCCAGTCCCCAGCCCCTTCCCTCACCAGCTGCATAATGCAGTGCACACTTACCTTTTCATGTCTCCCTCTAAGATAAACAGGAGTCTGGGGCTTTGCGTACTCTGCAGGCCTTCTAGCTCTAGGCTTCCTTAATTTGGACCACAGCCTGGATATACTCATCCTTCTGCGATCACTGCCTGCGGGTCATCAGCCTAGATTAAACTGTTCTTAATCTTTCTGCCTACTTTCCAAATTCAGCATTCTGTTGTTTCTTCCTTTAATTTTTTTCTCCCCTTAGTGGTGCTAAGGATTGAAACCAGGACCTTTTGATAGATGCTAGTTAGACCTTCCACCATTGAGCTATGTCTCTGAATTCTTTGAATCTTATAGGGCATATACAGTTTCCCTCTCCCTTCTCCCACACCAATTTGATCTTTCCATATCTGCATACATTCTATTGTATTGTCAAGATATTCTGTGGTTATCAAAAATGTGCTAATGGCTTATAGAAATATCCAAAACTAAGAATTCCCTTTCCAATTCTAGAGAACACAATCACTCCCCAACTCCCCCACATGATTGAATGCTCATAATGTTAATTCTCTTAATGTTGATTATAAATTCCAGCATAGACAGTGCTCAAGAGCGGTAAGGATATTTTTTCAGGTTCTAATGCAGCATCTAGGGAAATAAACGGGGAAGCTATGTGTAGAGGTGTGGTATAGTATTTCCAGATTACAAGGTAAAAGAATGTAACTTGAATTTTTATTAGTGATTAACTGTTCAATCAACTCATTGGCAAACTAGTAACTCTAGCCCTTATGGTAGTTGGAACTTTATTGTACTATCTCTATGATAAAGCTCTGGGAATCTAAAAAGCAGCTGAATTCCAACTTCATTTCAGACATGTCTGGGGGTGTGGCTAAGTGGGCACAGAGCTTGCCCAGCATTCTGTGAACTCCAGCATGCATAAAACTGGGCATGGTGGTGAACACTGGGGTCACAGCACTCGAATAGAGAGGCAGAGTTTAAGATGGTCATCAGCTAGATAATGAGTTTGAAGCCAGCCGGAGCTATGTAAGAGACCCAACAACAAAACCGTAAAGGCATCAGTAAACTCATGGTTTGACCTAAATGGTGTTGCCACCTACTACTCCCCATAATAAAATCTTCACACAAGTGTCATCCCTGGGGCCTTAACTCTACATTGCAGACTCTGTTCCGTGTCATGTGGAGAAAAATGTGCTTTTCTTCTTGGTAG
Seq C2 exon
CCTCGTCCAGGTCGTTGAAGGGCCTCAGAACATCCTCCAGCAGCGAGTGGCCCAGCGAGCCCAGCAAGGGCAACTCACTGGACTCAGATGAGTGCAGCCTGAGCAGTGGCACCCAGAGTAGCGGCTGCCCCGTAGCCGAGAGCAGGCGAGACTCTAAGAGCACCGAGCTGGAGAAAGACGCTCAGGAGGGCCTGGCGGAGTTTCCAGATGGTCTTATCAAAGAAAGCGACATTCTGAGTGATGAAGATGAGGACTTCCACCACCCTCTGAAACAGGGTAGCCCTACTAAGGACATTGAGATTCAGTTCCAGAGACTGAAAATCTCTGAGGAATCCGACGTGCACCCAGTTGGGCAGCAGCCTCTCACAGAGTCAGGTGAACAGCCCAAGCTGGTCAGGGGCCATTTTTGCCCCATTAAACGGAAAGCAAACAGCACCAAGAGGGGCAGAGGAACTTTGCTCAAGGCGCAGACTCGTCACCAGTCCCTGGACAGCCACCCAGAAACTGCCAGCATTGATCTAAACTTGGTCCTGGAGAGAGAATTCAGTGTCCAGAGCTTAACTTCAGTCGTCAATGAGGAGGGTTTTTATGAAACACAGAGCCATGGCAAATCATGATTTGTGTAGTGTGCTTACAATGCTCATTTGTTTTCAAATTGGTGGAAAAGAGAAACTGCAGGAAAACTATTCATGTTTGAGTTTTACGCAGTATATTTTTTCCACAAAACCTGTAAAGATTTAAGTTATTTTAATTTATTGTGAATCCGAAAACTAGATTTAGTTGGTCAGAATCTGTAAAGTACTAGCACCTATCCCTTTGGAGCAGCAATCAAATGATTTAGTCTTGTAATAAAATTGCATTTTAATTATCTTAGGTGCTTTTTTTTTCTTGGTAGCCTCATCCAGGTCCTTGAAGGTCCTCAGAACATCCTCCAGCAGTGAGTGGCCCAGCGAGCCCAGCAAGGGTGACTCACTAGACTCAGGATGTAGCCTGAGCAGTGTCACCCAGAGTAGCGGCTGCCCTGGTAGCCGAGAGCAGGCAAGGCTCTAAGAGCACTGTGCTTGGGAAAGTTGTGATTAACAGCTTTTAAGAGGGCCCCTACCCCCAGTCCTTTGGGCATTTTCTTTGAGCTGTTAGGTTTTGCTTTATTTAAAGCACTTTTATTTTTACATGGTTTAGAGGCACAACGTACAGATATTTCATTTTAGAAGGTTGTCATAAATGCTATTTTTACTAAACATGTCGTACCTATGCAGTATATACATTAAAGGAAAGCTTGCACTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023800-Tiam2:NM_011878:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.805
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCACTGGAGAAGACGTGTA
R:
TTCAGAGGGTGGTGGAAGTCC
Band lengths:
343-1737
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: