HsaINT0169671 @ hg19
Intron Retention
Gene
ENSG00000137747 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:29808]
Coordinates
chr11:117781422-117782575:-
Coord C1 exon
chr11:117782483-117782575
Coord A exon
chr11:117781466-117782482
Coord C2 exon
chr11:117781422-117781465
Length
1017 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TTCTGTGTCTCCCCCTGCAGGTC
3' ss Score
13.59
Exon sequences
Seq C1 exon
TGCTCACCGGACAACCGAGGTTGCCCACAGGGATTTTGCCAACAGCTTCTCAATCTTGAGATACAACTCCACCATCCAGGAAAGCCTCCACAG
Seq A exon
GTATGGTGGGGCAGGCAGGCTGCCTGTTTGTGAGCAGGGGAAGGAGTGGGTAGGAGAGGGTCTTTGAGTCAGGGAGCCCCCTTCACTGGCTTTTCTAGTATCCAGCCTCCAGGAGTCCACCATGAGTGTTCAGGGGCATCTTGGAAATAGTCCTTATTCACCAAACTGCCTTCTGACTTAAGAATTCTTATCTGAGGCTCGGTGCTGAGGACAACTGGAGACCAGGGGTGCCCCTGAGAGTTTATCAGGTCGTCAGAGGCAATTCATGAACCTTGGGACCACCAGTCGGCCAGGTGTTTGGACTGAGAGCTGCTGCAGGGAGTGGACCTGGATTGGTGGGGGAGAAGCACCACTGACACCCTGGCATGACACTTTGCACATGCCGCTCCTCTACTCGGCCCATTCTCTGCTCTCTCCACCAGTGCAGTTAGGGGACAGGGTAGACAGGCAGCAGTAGGGGACCGCCAGGTGCAGGCATCAGGGACAGGGAGGGCCACGTTGGAAGCATCAGAGGTTTGGGGTCTCTGCCAGCTAGCATTGTTTGCCCTACGGAGGGGAGAGAAGAAGCCAGGCTCCAAGAGAAGTAATGGTGAGGGAAGGGATGTGAATTTGCTGCAGCTGGATGCCAGCTCTGTGCTGCGTGGTTTCTGCATCTGCGTTGAGGAACTGTGTCAGAGGAGCACCAGACCACCTGTTTAGTTGTGAAAAGATGCTGCGACAATGAAGTCCTAAGTTCGAAGAACATGGATCTGGGCCAATGTCTGCAATGTGCCACAAGGAAACTAGTTGAGGGGATGAGAGTGGAGATGGTTTGCACTGAGCCACTCCGATTCTGGACAAAGCACTGGAAGGGACAATGTCACATGGGGAAAGGGGAAGCTCAGAATCTCCTGCTTCCTGTACAAAGGGTAGCTTCCTTGGAAACAGGATAGGAACTGAGCAGGAGTCAATCAGGAAGGCTTCCTGGAGGAGGTAGCTAATGTGCCCTTTTCCCACTTTCTGTGTCTCCCCCTGCAG
Seq C2 exon
GTCTGAATGCCCTTCCCAGCGGTATATCTCTCTCCAGTGTTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137747-TMPRSS13:NM_001077263:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(34.1=100)
A:
NA
C2:
PF154941=SRCR_2=FE(16.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)