MmuINT0162671 @ mm10
Intron Retention
Gene
ENSMUSG00000037129 | Tmprss13
Description
transmembrane protease, serine 13 [Source:MGI Symbol;Acc:MGI:2682935]
Coordinates
chr9:45336094-45337089:+
Coord C1 exon
chr9:45336094-45336186
Coord A exon
chr9:45336187-45337045
Coord C2 exon
chr9:45337046-45337089
Length
859 bp
Sequences
Splice sites
5' ss Seq
TAGGTGCAG
5' ss Score
0.29
3' ss Seq
CTTTGTGTTCCATACTGCAGGTC
3' ss Score
9.66
Exon sequences
Seq C1 exon
CGCTTACCGAACAACTGAGGTAGCCCACAGGGACATCACCAGCAGCTTCTTACTCTCCGAATACAACACCACCATCCAGGAAAGCCTCTATAG
Seq A exon
GTGCAGTGCAACAACCCGACTGTGTGCAAACAGAGGACTGAGGGACCGGTGGGGGGTGCTTAGAGTCGGGGAGCCCCTCTCTCTTGCTTTCCCAGCACCCAGACTCCAAGGCTCCCTTGCAATGCCAGGAGCACTATGGACAGCTTGGGCTTAAAAGCTCTTGTCTGAGATCTGGTGCAGAGATCACCCCCAAGGCTGGAAGTGATCCCGCCTCCTAATCGCTAAAAGCAACTAAGAAACCTTGAGGTTCCAGAGAGCTAGGTGTTTGGATTAAAAGGTTCTGCATGGCGGACTTAGAGAGGGAAGATGCATCCCTGGGGACAGGAACAGGGGACTGATGGGTACTAGTGGTGAGGGCCCAGGAGGTCCATCTGAGGAAGCCTCGGCCCTTCTTGCCATCTTTGCACTGTAGTCCTCCAGCCTTGCTTTCCTAACTTGAGGATGAGGGGCGAAGCAAGCCTCCAGTTAAGAGATGATCCCTCAGCGCCTGCTTTGGGCTCGGCCCTCTGCATGCCACAGTGAGGAGCATGAGGCTATAGAAGAGCCTCATTAGGATCTGCTAAGTTGTGGAAAGAGCTGGGACCATGAAGGCCTGCTTGGGTTCCAAGAACAGGGAACTAGCGGGTGTGTGTGGTTCACCAGATGAAAACTGGGAGAGATGGGGATTATTATGGGGATAGTTAACCCACATCCACCTTCCTGGAGAAATCTCTGTAAGGAAGACCATCATCCTACTGGGAGATGTCCGGCTTGCTGCTATTGTTAAAGGTGGAAATGGGACAGGGTCTGAGCAGATACCAGTCAGAAAAAGGAGGCAGCTGCTGACCTTCTTTCTCACCCTTTGTGTTCCATACTGCAG
Seq C2 exon
GTCGCAATGTCCTTCCCGGCGGTATGTCTCCCTCCAGTGTTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037129:ENSMUST00000034597:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(34.1=100)
A:
NA
C2:
PF154941=SRCR_2=FE(16.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types