HsaINT0169725 @ hg19
Intron Retention
Gene
ENSG00000137648 | TMPRSS4
Description
transmembrane protease, serine 4 [Source:HGNC Symbol;Acc:11878]
Coordinates
chr11:117985853-117988169:+
Coord C1 exon
chr11:117985853-117985995
Coord A exon
chr11:117985996-117988019
Coord C2 exon
chr11:117988020-117988169
Length
2024 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
TCTGTTCTGGTCTCTCACAGGGT
3' ss Score
10.9
Exon sequences
Seq C1 exon
GGAAGATGTCTGACATACTGCTGCAGGCGTCAGTCCAGGTCATTGACAGCACACGGTGCAATGCAGACGATGCGTACCAGGGGGAAGTCACCGAGAAGATGATGTGTGCAGGCATCCCGGAAGGGGGTGTGGACACCTGCCAG
Seq A exon
GTGGGGCCTCCAAGAATCATGGGGAGTTCTAAGAATAGGGTTTAGGTCCTAGAGAGATGAGAAAACCCAGAGGCTGCATGCCCTACAGGAAGCCTTGCATATCATGGGCACTCAATGTGTGATGATGGGAGGAAGAGAGGGAGGGAAGGAAAGGATAGTCAGATAAAAGTGTACCAATAGATGAGTGGGTGGATGGATGGATGCAGACAAGCAGAGAGATTTCAAATGTCTCTTTCACATTCGAAGATGATGTTACTGGCCTGGCATGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGGTGATTTGAGGTCAGGAATTCAAGACCAGCCTGGCCAACATGGTGAAATCCCATCTCTACTAAAAAGAATACAAAAATTAGCTGGGCGTGGTGGCACGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGCAGTAAGCTGAGATTGCGCCACTGCACTCCAGCCTGGGTGACCCAGCAAGACTCCATCTGAAAACAACAACAACAACAAAGATGACATTACTCATCCACCCCACCCACCCTTCTCACTAGCTACAGAATGATTAGCCCCTTGAGGTCAGGAATCCCAGGTCTATTTTCTCTGTGACTCTCCCCAAGCTGCTGAACTACACTAGGAAAGAATTACCGCCTGCAGAATGCTGGAAGCACATCTGTGTGTGCCCTCACCCCGGCCTCATTGGCCATCAGGACTGCTTAGCAATCCCTGTAGACCTTCTTCCTCCCCCATACTTCCAGAGGATCTTCTGAACTATTTTCTTTTTTTATTTTTTCTTTTATGTTTTTTAACAGAGACAGGGTCACTATGTTGCCCAGTCTGGTCTCAAACTCCTGGGTTCAAGGGATTCTCCCACCTCAGCTTTCCAAAATGCTGGGATTACAGGCATGAGCCATCGTGCTTGGCCTGAACCATTTTCATTAAAACCCCTACCCTACTCTCACCTCCATTTCCAGTCATTAAATTCCTTCATTTAAGAGGCATCTCTTAGTCATCGCATGTGTGCCATGAACATGGTAGTCTTTGGAGACCCCTCAGGGAGCTCACAGTGGTTGGGGGAAAGGGGGGCATTAAACAGACATTTAAGCTATAGTTTTGGGTTCAGAGGGAGGAAGCCCCAGGGGCTAAAACAGCTGATAAGGACTCCCAGATAAGTGCACTTTTCACTATCTGGCATTTTCTTGTTTTGTTATTTGCTTGTTCACTGTCTCTCACCCCATTTGATCCTAAGCTTTCTGAGGGCAGGGATCTTTGTTTTTTTTCATCAGTTGGATCCCAATTGCTTAGAACACTACCTGGCACAAAATAGGCACTCTATAAGTGATTACACAAATTTTGGAACGACTAGGTTAAACAATGATAACCAGGCTTTTTTTTTTTTTTTTGAGACTGAGTCTCACTCTGTTGCCCAGGCTAGAGTGAAGTGGTTTGATCTCGGCTCACTGCAGCCTCCGCCTCTGGGTTCGAATGATTCTCCACCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCTGCCACTATGCCCAGCTAATTTTTGTATTTGTAGTAGAGACGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATTCACCCGCCTCAGCCTCCCAAGGTGCTGGGATTACAGGTGTGAGCCACCGCTCCTGGCCAACAACCAGGCTTTTTTAAGACATCACTCAGAGCCTTTAATTTGCTAATGTGAGTTGTGAATCTCTGAGAGAAGGCTAACGGCATGCTTGCAACTTACTTGTCCACAGACAAGCCTTTCTGCCCCAGAAGAGAAGACCATTCTAGGGTGCTAATGAGCAAAGAGGGTGAGGGTGGAATATCGGAGAGCAGCAGGGAGTGCAGGGGAACAGATAGGCCAGTTCAGGGAGCAGAGAAGGAGAAGCCCCCCCACCTCACCTGCCCTCCCCAGCAGTCTCTGTTCTGGTCTCTCACAG
Seq C2 exon
GGTGACAGTGGTGGGCCCCTGATGTACCAATCTGACCAGTGGCATGTGGTGGGCATCGTTAGTTGGGGCTATGGCTGCGGGGGCCCGAGCACCCCAGGAGTATACACCAAGGTCTCAGCCTATCTCAACTGGATCTACAATGTCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137648-TMPRSS4:NM_001173552:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.6=88.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)