RnoINT0153398 @ rn6
Intron Retention
Gene
ENSRNOG00000026650 | Tmprss4
Description
transmembrane serine protease 4 [Source:RGD Symbol;Acc:1305033]
Coordinates
chr8:49471157-49472571:-
Coord C1 exon
chr8:49472429-49472571
Coord A exon
chr8:49471307-49472428
Coord C2 exon
chr8:49471157-49471306
Length
1122 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CCCGCCCTAACTTTCCACAGGGT
3' ss Score
9.98
Exon sequences
Seq C1 exon
GGAAGATGTCTGACACGCTGCTGCAGGCGTCAGTCCAGGTCATCGACAGCGCACGGTGCAATGCGGAGGATGCCTACCAGGGGGAGGTGACTGCTGGCATGCTGTGTGCAGGTACCCCACAGGGTGGCAAGGACACCTGCCAG
Seq A exon
GTGGGTCCTCGGAAGACCACGGGAAGCTCTGTGAACAGGAATAGGTCCTAGAGAGATGTGAACCCCTACAAGCTGGATGCCCGAACAAAACCTGGCAGATTGGGGTGCTTGGTTTGTGATGAAGGAAGGCAGAAACGTGGCCTGAGAAAGAAGGAAGGAGGGATGGGTGGCTAGATGATATTTGGCTCTAGATGAAGGGAAAGTATCTGAATAATATATTTCACATTTAAAGATGCCATTGCTACCTTCTCCACCCACCCTCACTCCCCAACATCTATGACCCCTTTGGGGACAGTGGCTCCAGGTCTATTTTCCCTCTCGCTGTCCTGTTCCTTATCATAAAATCATCCCATGATAGGTGAGCTTTGGTACATGGACTTCCTCCCATCTCCATGGCCACTGGGACTTGTGAGCAATTCCTATGTATCATCTTTCCACCGCTAACCTCTAGAGGATCTTTGGAGCCATTTTTATTCAAATTTCTCAGTCTACCACCATCTCCAGACATCAAAATCCTCATTAAAGAGCTGTCTCTAAATCATCCCTTGTGAGCCATGGACACAGCAGATTTAAAGACCGTGTCTGCCCTCAGGAACTCATGGTGGCTACATGGTGGCCGGCTGTCAGGCCACAGTATCACTGGGTCTCAGAGAGAGGCAGTGGGTGTAAGTTTCACTACTTCTTTCTGTCATCTGCTCATGTATTGGCTCCGTCAACCCAGTTGATTGTAAACTTCCTGAGAGCAAAGATTCCTTTTCAAGTCCAATGAATCCCAGTTATCCAGAACAGGACCTGCCATAGACAGGCACTCAATGGCAAAGCCAATAGATGTAGGAACTACTGGACTTAAGCTAAGTGCACTTTGCTAGTGTAACTTATGGCCCTCTGATAAGGCAGGCACATGACCTCAACTTACCTGCTCACAGACGGACCATCCCCCCCCACCTCCCACAAGAGTAATGAACACTGAACAATATTACAAAGAAGGAGGTGGAGAAATGAGTGCACACAGAGCCATGGAGAGTGCAGGGAAACAGATGGACAAGTTGAGGGACAGGGGGAAGAAAGCTACCCTTAGCCTGCCCTGCCCTCTCCAGCAGCTCCCGCCCTAACTTTCCACAG
Seq C2 exon
GGTGACAGTGGTGGGCCTTTGATGTACCATTATGACAAGTGGCAGGTTGTAGGCATCGTGAGCTGGGGCTATGGCTGTGGGAGCCCAAGTACCCCTGGAGTGTACACCAAGGTCACTGCCTATCTTGACTGGATCTACAATGTTCGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026650:ENSRNOT00000040313:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.6=88.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGTCTGACACGCTGCTG
R:
CCTCCGAACATTGTAGATCCAGT
Band lengths:
291-1413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]