MmuINT0162729 @ mm10
Intron Retention
Gene
ENSMUSG00000032091 | Tmprss4
Description
transmembrane protease, serine 4 [Source:MGI Symbol;Acc:MGI:2384877]
Coordinates
chr9:45173858-45175244:-
Coord C1 exon
chr9:45175102-45175244
Coord A exon
chr9:45174008-45175101
Coord C2 exon
chr9:45173858-45174007
Length
1094 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CCTGCCCTGACTTTCCACAGGGT
3' ss Score
10.49
Exon sequences
Seq C1 exon
GAAAGATGTCTGACATGCTACTGCAGGCATCAGTCCAGGTCATTGACAGCACACGGTGCAATGCAGAGGATGCCTACGAAGGGGAAGTGACCGCTGAGATGCTGTGTGCAGGTACCCCACAGGGTGGCAAGGACACCTGCCAG
Seq A exon
GTGGGTCCTCCGAAGACCGCAGGGAGCTCTGTGAAGAGGGATGCAAGTCCTAGAGAGATGTGAACCCCTACAAGCTGGATGCCCATGTGGAGGTTGTAGCGCTCAGTTTGTGATAAAGGAAGGCATAAATATGGTCTGAGAAAGTTAGAAGGAGGGATGGGTGGATAGGTGATAGTTGGCTCTAGACGAGGGAAAAGAATCTAAATTTCACATTTAAAGATGACATTGCTACTTTCTCTACCCACCCTCACTCCCCATCATCTATGCCCCCTTTGGGGACAGTGGCTCCAGGTCTATTTTCCCTCTCACTGTCCCTGTTCTTTATTAGAAAGCTCATCTCATGCTAGGCGAGCTTTGGTACATGGGTCTGCCCCCATCTCCATGGCCAACGGGACTTGTGAGCGATTCCGATGTACGATGTACCTTCTTAACACCCCAGACCCCAGAGGATCTCTGGAGCCATTTTTATTCAAATTTCTCAGTCTACACCCATCTCCAGACATTAAAATCCTCACTTGAGAGCTGTCTCTAAATCTTTCCTTGTGGGCCATGAACATGGCAGATTTAAAGACCGACTGTGCCTGCCCTTCAGGAACTCATGGTGGTCACACAGATGGCCATAGTGTCACTGCTCTCAGAGAGAGGCAGTGAGTGTAGGTTTCACTACTTGATTTCTTTCATCTGCTCATTCATTGGCTCTGTCAACCCTTTTGATCATAAACTTCCTGAAGGCAAAGATCTTTTTTCAAGTCCATTGAATCTCAGTTATGCAGAGCATGACGGTACCACAGACAGGCCCTCCACGGCAAGTCAATAGATGTAGGAACTACTGGACTTAAACTAAGTTCACTTTGCTAGTGTGACTTATGAGCCTCTGATAAGGCAGGCAGTATGCCCTCAACTTACCTGCCCACAGATGGGCCATTCCCCTCTCCCCCAAGAGTAACGGACACTGAACAATATGAGCAAGAAGGAGGGTGGAGAAGTGAGCATGTGCAGAGCCACAGAAAGGGCAGGGGTGGGGTGAGGTGGCGTGAGGTGGGGGGACAGATGGGCCTGCCCTCTCCAGCAGCTCCTGCCCTGACTTTCCACAG
Seq C2 exon
GGTGACAGTGGTGGGCCTTTGATGTACCATTCTGACAAGTGGCAGGTAGTAGGCATCGTGAGCTGGGGCCATGGATGCGGCGGCCCAAGTACTCCTGGAGTGTATACCAAGGTCACTGCCTATCTCAACTGGATCTACAATGTTCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032091:ENSMUST00000034599:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.6=88.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTCTGACATGCTACTGC
R:
TCCGAACATTGTAGATCCAGTTGA
Band lengths:
288-1382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types