HsaINT0171536 @ hg19
Intron Retention
Gene
ENSG00000116176 | TPSG1
Description
tryptase gamma 1 [Source:HGNC Symbol;Acc:14134]
Coordinates
chr16:1272196-1272917:-
Coord C1 exon
chr16:1272652-1272917
Coord A exon
chr16:1272342-1272651
Coord C2 exon
chr16:1272196-1272341
Length
310 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GCCTGTTCCCCCCACCCCAGAGC
3' ss Score
7.83
Exon sequences
Seq C1 exon
GTCCCTGAACTCATCCGACTACCAGGTGCACCTGGGGGAACTGGAGATCACTCTGTCTCCCCACTTCTCCACCGTGAGGCAGATCATCCTGCACTCCAGCCCCTCAGGACAGCCGGGGACCAGCGGGGACATCGCCCTGGTGGAGCTCAGTGTCCCCGTGACCCTCTCCAGCCGGATCCTGCCCGTCTGCCTCCCGGAGGCCTCAGATGACTTCTGCCCTGGGATCCGGTGCTGGGTGACCGGCTGGGGCTATACGCGGGAGGGAG
Seq A exon
GTGAGGAGCCCCCGTGGGGATGCTGGGATGGAGGAAGGCAAGGGCGGCAGGAAGAGAGCTGGCTTGAGGGATGCTGATGCTACCACCTGCTCCTGGTGGCTTCCACACCCAGCCAAGGCCGCCCCTATCGGCTGTCCCTTTTCAAAGCCTGTCGTGTGGATCCAAAGCAGCAGCCAAACGTCAGATCACAACCCACGTGCCGTGACGAGGGTCGTGGTGGCATGGGACTTGTGTCTGGCAAGGTCTCCCATCCCCCCAGTGCAGGGCCTGGTGCCCCAACCTTCTCTGAAGCCTGTTCCCCCCACCCCAG
Seq C2 exon
AGCCTCTGCCACCCCCGTACAGCCTGCGGGAGGTGAAAGTCTCCGTGGTGGACACAGAGACCTGCCGCCGGGACTATCCCGGCCCCGGGGGCAGCATCCTTCAGCCCGACATGCTGTGTGCCCGGGGCCCCGGGGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116176-TPSG1:NM_012467:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.0=100)
A:
NA
C2:
PF0008921=Trypsin=FE(21.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGGGAACTGGAGATCACT
R:
CATGTCGGGCTGAAGGATGC
Band lengths:
348-658
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)