MmuINT0164376 @ mm10
Intron Retention
Gene
ENSMUSG00000033200 | Tpsg1
Description
tryptase gamma 1 [Source:MGI Symbol;Acc:MGI:1349391]
Coordinates
chr17:25373175-25373870:+
Coord C1 exon
chr17:25373175-25373440
Coord A exon
chr17:25373441-25373724
Coord C2 exon
chr17:25373725-25373870
Length
284 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TGAACTTTCCTTTCTCTCAGAGC
3' ss Score
10.3
Exon sequences
Seq C1 exon
GTCTGTGAACTCGTCTGATTATCAGGTGCACTTGGGAGAGCTTACGGTCACACTGTCTCCCCACTTCTCCACTGTAAAACGGATCATCATGTACACTGGCTCTCCAGGACCACCGGGGTCCAGTGGGGACATTGCCCTGGTGCAGCTGTCCTCCCCGGTGGCCCTTTCCAGCCAGGTCCAGCCTGTGTGCCTCCCAGAGGCCTCAGCTGACTTCTACCCTGGGATGCAGTGCTGGGTGACTGGCTGGGGCTATACAGGGGAGGGAG
Seq A exon
GTAAGGAGCCCCTTCTGAGGTCCTCCCCCATGGGGATAAGGGAGGGTAAGAGGGGCCACCTGGGGAGGAGTGGGAGCCACTGGTGCCACTGCTTTGCTCCTAGTGGCCACGCCTAGAGGCCAACCACTTATTGGCCTCCACCAAGATCCACATCTGACCCACAGAAAGACAGTGCCAGCACGGGTAGGGGGTTGAACCCCATGAGGGATGTGCCTGCTGCGTGTTCACTCTCAGCAGTGAGAGGCTGGTTACTCAACCTCCGCCTGAACTTTCCTTTCTCTCAG
Seq C2 exon
AGCCTCTGAAGCCCCCATACAACCTTCAGGAGGCCAAAGTCTCTGTGGTGGATGTAAAGACCTGCAGCCAGGCTTACAATAGTCCCAATGGCAGCCTCATCCAGCCAGACATGCTATGCGCCCGGGGCCCTGGGGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033200:ENSMUST00000024999:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(36.7=91.7)
A:
NA
C2:
PF0008921=Trypsin=FE(21.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCACTTGGGAGAGCTTAC
R:
CACCACAGAGACTTTGGCCTC
Band lengths:
292-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types