MmuINT0164376 @ mm9
Intron Retention
Gene
ENSMUSG00000033200 | Tpsg1
Description
tryptase gamma 1 [Source:MGI Symbol;Acc:MGI:1349391]
Coordinates
chr17:25510120-25510815:+
Coord C1 exon
chr17:25510120-25510385
Coord A exon
chr17:25510386-25510669
Coord C2 exon
chr17:25510670-25510815
Length
284 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TGAACTTTCCTTTCTCTCAGAGC
3' ss Score
10.3
Exon sequences
Seq C1 exon
GTCTGTGAACTCGTCTGATTATCAGGTGCACTTGGGAGAGCTTACGGTCACACTGTCTCCCCACTTCTCCACTGTAAAACGGATCATCATGTACACTGGCTCTCCAGGACCACCGGGGTCCAGTGGGGACATTGCCCTGGTGCAGCTGTCCTCCCCGGTGGCCCTTTCCAGCCAGGTCCAGCCTGTGTGCCTCCCAGAGGCCTCAGCTGACTTCTACCCTGGGATGCAGTGCTGGGTGACTGGCTGGGGCTATACAGGGGAGGGAG
Seq A exon
GTAAGGAGCCCCTTCTGAGGTCCTCCCCCATGGGGATAAGGGAGGGTAAGAGGGGCCACCTGGGGAGGAGTGGGAGCCACTGGTGCCACTGCTTTGCTCCTAGTGGCCACGCCTAGAGGCCAACCACTTATTGGCCTCCACCAAGATCCACATCTGACCCACAGAAAGACAGTGCCAGCACGGGTAGGGGGTTGAACCCCATGAGGGATGTGCCTGCTGCGTGTTCACTCTCAGCAGTGAGAGGCTGGTTACTCAACCTCCGCCTGAACTTTCCTTTCTCTCAG
Seq C2 exon
AGCCTCTGAAGCCCCCATACAACCTTCAGGAGGCCAAAGTCTCTGTGGTGGATGTAAAGACCTGCAGCCAGGCTTACAATAGTCCCAATGGCAGCCTCATCCAGCCAGACATGCTATGCGCCCGGGGCCCTGGGGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033200-Tpsg1:NM_012034:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.047
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(48.1=97.8)
A:
NA
C2:
PF0008921=Trypsin=PU(19.0=91.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCACTTGGGAGAGCTTAC
R:
CACCACAGAGACTTTGGCCTC
Band lengths:
292-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: