HsaINT1045001 @ hg38
Intron Retention
Gene
ENSG00000116176 | TPSG1
Description
tryptase gamma 1 [Source:HGNC Symbol;Acc:HGNC:14134]
Coordinates
chr16:1222196-1222917:-
Coord C1 exon
chr16:1222652-1222917
Coord A exon
chr16:1222342-1222651
Coord C2 exon
chr16:1222196-1222341
Length
310 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GCCTGTTCCCCCCACCCCAGAGC
3' ss Score
7.83
Exon sequences
Seq C1 exon
GTCCCTGAACTCATCCGACTACCAGGTGCACCTGGGGGAACTGGAGATCACTCTGTCTCCCCACTTCTCCACCGTGAGGCAGATCATCCTGCACTCCAGCCCCTCAGGACAGCCGGGGACCAGCGGGGACATCGCCCTGGTGGAGCTCAGTGTCCCCGTGACCCTCTCCAGCCGGATCCTGCCCGTCTGCCTCCCGGAGGCCTCAGATGACTTCTGCCCTGGGATCCGGTGCTGGGTGACCGGCTGGGGCTATACGCGGGAGGGAG
Seq A exon
GTGAGGAGCCCCCGTGGGGATGCTGGGATGGAGGAAGGCAAGGGCGGCAGGAAGAGAGCTGGCTTGAGGGATGCTGATGCTACCACCTGCTCCTGGTGGCTTCCACACCCAGCCAAGGCCGCCCCTATCGGCTGTCCCTTTTCAAAGCCTGTCGTGTGGATCCAAAGCAGCAGCCAAACGTCAGATCACAACCCACGTGCCGTGACGAGGGTCGTGGTGGCATGGGACTTGTGTCTGGCAAGGTCTCCCATCCCCCCAGTGCAGGGCCTGGTGCCCCAACCTTCTCTGAAGCCTGTTCCCCCCACCCCAG
Seq C2 exon
AGCCTCTGCCACCCCCGTACAGCCTGCGGGAGGTGAAAGTCTCCGTGGTGGACACAGAGACCTGCCGCCGGGACTATCCCGGCCCCGGGGGCAGCATCCTTCAGCCCGACATGCTGTGTGCCCGGGGCCCCGGGGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116176:ENST00000234798:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.415 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.0=100)
A:
NA
C2:
PF0008921=Trypsin=FE(21.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGGGAACTGGAGATCACT
R:
CATGTCGGGCTGAAGGATGC
Band lengths:
348-658
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains