RnoINT0155085 @ rn6
Intron Retention
Gene
ENSRNOG00000018701 | Tpsg1
Description
tryptase gamma 1 [Source:RGD Symbol;Acc:631355]
Coordinates
chr10:14729793-14730505:+
Coord C1 exon
chr10:14729793-14730058
Coord A exon
chr10:14730059-14730359
Coord C2 exon
chr10:14730360-14730505
Length
301 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CGAACCTTCCTTTCTCTCAGAGC
3' ss Score
9.26
Exon sequences
Seq C1 exon
GTCTGTGAACTCGTCGGATTATGAGGTGCACTTGGGGGAGCTGACGATCACACTGTCTCCTCATTTCTCCACCGTAAAGCAAATTATCATGTACTCTAGTGCCCCAGGACCACCGGGGTCCAGTGGAGACATTGCCCTGGTGCAGCTGGCCACCCCGGTGGCTCTTTCCAGCCAGGTCCAGCCTGTGTGCCTTCCAGAGGCCTCAGCCGACTTCCACCCTGGGATGCAGTGTTGGGTGACAGGCTGGGGCTATACACAGGAGGGAG
Seq A exon
GTAAGGAGCCCCTTCTGAAATCCCCCACCATGGGGATAAGGGAAGGTAAGGGAGGGCTACCTGGGGAGGAGCAAGAGCCACTGGTGCCACCACTTGCTCCTAGTGGCCTTGCCTATCTCCCTTAAAGACCAACCACCTATTGGCCTCTGTCAAGACCCACGTCTGACCCACAGACTGGGGCCCAATAAGGCCAGCATGGTGGGACATTAATTACGTGAGAGATACGTGGCCTGCCGTATGTTTGCTCCCAGCACAGTGAGGCCGGTCACTCAACCTCCTCCCGAACCTTCCTTTCTCTCAG
Seq C2 exon
AGCCTCTGAAACCCCCATACAATCTTCAGGAGGCCAAGGTCTCTGTGGTGGATGTAGAGACCTGCAGCCAGGCTTACAGCAGCTCCAACGGCAGCCTCATTCAGTCAGACATGCTATGCGCCTGGGGCCCTGGGGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018701:ENSRNOT00000025236:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.0=100)
A:
NA
C2:
PF0008921=Trypsin=FE(21.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGAGGTGCACTTGGGGGA
R:
GTCTGACTGAATGAGGCTGCC
Band lengths:
358-659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]