RnoEX0093113 @ rn6
Exon Skipping
Gene
ENSRNOG00000018701 | Tpsg1
Description
tryptase gamma 1 [Source:RGD Symbol;Acc:631355]
Coordinates
chr10:14729062-14730505:+
Coord C1 exon
chr10:14729062-14729233
Coord A exon
chr10:14729793-14730058
Coord C2 exon
chr10:14730360-14730505
Length
266 bp
Sequences
Splice sites
3' ss Seq
CGTCTCTCCCTGCCTCCCAGGTC
3' ss Score
9.87
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGTGTGGCCAGCCCCAGGTTTCACATGCAGGAAGTCGAATCGTGGGAGGGCACGCTGCCCAAGCTGGTGCATGGCCGTGGCAGGCTAGCCTCCGTCTGCAGAAGGTGCATGTGTGTGGAGGATCCCTGCTCAGTCCAGAATGGGTACTCACAGCAGCCCACTGCTTCTCTGG
Seq A exon
GTCTGTGAACTCGTCGGATTATGAGGTGCACTTGGGGGAGCTGACGATCACACTGTCTCCTCATTTCTCCACCGTAAAGCAAATTATCATGTACTCTAGTGCCCCAGGACCACCGGGGTCCAGTGGAGACATTGCCCTGGTGCAGCTGGCCACCCCGGTGGCTCTTTCCAGCCAGGTCCAGCCTGTGTGCCTTCCAGAGGCCTCAGCCGACTTCCACCCTGGGATGCAGTGTTGGGTGACAGGCTGGGGCTATACACAGGAGGGAG
Seq C2 exon
AGCCTCTGAAACCCCCATACAATCTTCAGGAGGCCAAGGTCTCTGTGGTGGATGTAGAGACCTGCAGCCAGGCTTACAGCAGCTCCAACGGCAGCCTCATTCAGTCAGACATGCTATGCGCCTGGGGCCCTGGGGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018701_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.3=75.9)
A:
PF0008921=Trypsin=FE(39.0=100)
C2:
PF0008921=Trypsin=FE(21.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGGTTTCACATGCAGGAA
R:
CTGGCAGGCATCCCCAGG
Band lengths:
306-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]