RnoINT0155084 @ rn6
Intron Retention
Gene
ENSRNOG00000018701 | Tpsg1
Description
tryptase gamma 1 [Source:RGD Symbol;Acc:631355]
Coordinates
chr10:14729062-14730058:+
Coord C1 exon
chr10:14729062-14729233
Coord A exon
chr10:14729234-14729792
Coord C2 exon
chr10:14729793-14730058
Length
559 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CGTCTCTCCCTGCCTCCCAGGTC
3' ss Score
9.87
Exon sequences
Seq C1 exon
GGTGTGGCCAGCCCCAGGTTTCACATGCAGGAAGTCGAATCGTGGGAGGGCACGCTGCCCAAGCTGGTGCATGGCCGTGGCAGGCTAGCCTCCGTCTGCAGAAGGTGCATGTGTGTGGAGGATCCCTGCTCAGTCCAGAATGGGTACTCACAGCAGCCCACTGCTTCTCTGG
Seq A exon
GTGAGTTACCTCATGAAGCCTGACTGCCTGGGCTTATGGGGCAGTGACAGCAAACAGGACGTTGCTTGGCCTGTGACTCACCCTTGGTCCAAGGTTCCCTATTCATTAGAGAAAACTACATTAAGGTCCACCCACCTGAAGTGGCAGCCTGCAGCCCCAGTGGGAGTGGGTGGGGCTCCTTTCCCACATCCGACATGGGAGGAGAATGCAATCTCTATCGGGCATAAGTGTGCTCCTGGCCACCCTTCTAGCTTGTATTTGGAAGTATCCTAAACCTAGTCAGCCCAAAGCCCTTCCACTTGTCTTGTACACTTCTGGTTGGGGAGAGTTTCCTGTCCCCAGAATGCCAGACACCTTCCAGCCAAAGGTGGCAGGACCAAAGACTGCTGTCCTTGGGTCCTTAAGTGGGAGGCACTGCCAGGTTCAGGCCCATGCACACAGTAGCTGTTTTTGTGCCGAGTACCGAGGACAGATGGGACATTGGGAGGGGTGGGCGGTGGATATTGGTGGTGGTCGTCATTGTTGGAGGGGGACACTCACGTCTCTCCCTGCCTCCCAG
Seq C2 exon
GTCTGTGAACTCGTCGGATTATGAGGTGCACTTGGGGGAGCTGACGATCACACTGTCTCCTCATTTCTCCACCGTAAAGCAAATTATCATGTACTCTAGTGCCCCAGGACCACCGGGGTCCAGTGGAGACATTGCCCTGGTGCAGCTGGCCACCCCGGTGGCTCTTTCCAGCCAGGTCCAGCCTGTGTGCCTTCCAGAGGCCTCAGCCGACTTCCACCCTGGGATGCAGTGTTGGGTGACAGGCTGGGGCTATACACAGGAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018701:ENSRNOT00000025236:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.3=75.9)
A:
NA
C2:
PF0008921=Trypsin=FE(39.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGCCTCCGTCTGCAGAAGG
R:
CTCCCTCCTGTGTATAGCCCC
Band lengths:
354-913
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]