HsaINT0171535 @ hg38
Intron Retention
Gene
ENSG00000116176 | TPSG1
Description
tryptase gamma 1 [Source:HGNC Symbol;Acc:HGNC:14134]
Coordinates
chr16:1222652-1223594:-
Coord C1 exon
chr16:1223423-1223594
Coord A exon
chr16:1222918-1223422
Coord C2 exon
chr16:1222652-1222917
Length
505 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
CCAGCCACCTTCCCTCCCAGGTC
3' ss Score
8.56
Exon sequences
Seq C1 exon
GGTGTGGCCGGCCGCAGGTTTCGGATGCAGGCGGCCGGATCGTGGGGGGTCACGCTGCCCCGGCCGGCGCATGGCCATGGCAGGCCAGCCTCCGCCTGCGGAGGGTGCACGTGTGCGGCGGGTCACTGCTCAGCCCCCAGTGGGTGCTCACAGCTGCCCACTGCTTCTCCGG
Seq A exon
GTGAGTGTCCGGGTGGGCAGGGGCAGTCTCAATGTCCAGGCCCCAGTGGGGCATGCGCCAGCGCAGAGGCCTCCACTTGGTCTTGACTCACTCCGAGGCTTGGGAACTCTGAGCCTACTTCCTTCCAATGGAAAGGGAGGAGCTGGTTGCCCACCTTCTGTGAGGTTCTGCAGCTCTTTGCTCACCTCTAGGGATGGACAGCTCCCTCCCTCCTTCCCTCCCCTCGGTCTCTTCACGTGGAGCTGAGCTTGCAATCTGCCTCCTGACCAGCCCCTGCTGGTGTCGGGCATGCTGCTGGCTTTTCCAGGGGCTGGCAGGAACCCCAAGGTGCTGCCGTGGTCCTTGGGCCCTGCAGGGTGAGGCCACTGCCCAGGCTTTCTGCGTCCCAAGCCTAGGAGGGAAGAGCTGGGCTTCGGATGCCTGCAAGGGTAGGGTCTGGGCGGGGCCGACACTGACCTCCAGCCTCCGCAGCTGGCCCCTCTCACCCAGCCACCTTCCCTCCCAG
Seq C2 exon
GTCCCTGAACTCATCCGACTACCAGGTGCACCTGGGGGAACTGGAGATCACTCTGTCTCCCCACTTCTCCACCGTGAGGCAGATCATCCTGCACTCCAGCCCCTCAGGACAGCCGGGGACCAGCGGGGACATCGCCCTGGTGGAGCTCAGTGTCCCCGTGACCCTCTCCAGCCGGATCCTGCCCGTCTGCCTCCCGGAGGCCTCAGATGACTTCTGCCCTGGGATCCGGTGCTGGGTGACCGGCTGGGGCTATACGCGGGAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116176:ENST00000234798:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.353 A=NA C2=0.415
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.3=75.9)
A:
NA
C2:
PF0008921=Trypsin=FE(39.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTTCGGATGCAGGCG
R:
GAGGCAGACGGGCAGGATC
Band lengths:
351-856
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains