RnoALTA0041898-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000018701 | Tpsg1
Description
tryptase gamma 1 [Source:RGD Symbol;Acc:631355]
Coordinates
chr10:14729062-14730058:+
Coord C1 exon
chr10:14729062-14729233
Coord A exon
NA
Coord C2 exon
chr10:14729892-14730058
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CAAATTATCATGTACTCTAGTGC
3' ss Score
3.79
Exon sequences
Seq C1 exon
GGTGTGGCCAGCCCCAGGTTTCACATGCAGGAAGTCGAATCGTGGGAGGGCACGCTGCCCAAGCTGGTGCATGGCCGTGGCAGGCTAGCCTCCGTCTGCAGAAGGTGCATGTGTGTGGAGGATCCCTGCTCAGTCCAGAATGGGTACTCACAGCAGCCCACTGCTTCTCTGG
Seq A exon
NA
Seq C2 exon
TGCCCCAGGACCACCGGGGTCCAGTGGAGACATTGCCCTGGTGCAGCTGGCCACCCCGGTGGCTCTTTCCAGCCAGGTCCAGCCTGTGTGCCTTCCAGAGGCCTCAGCCGACTTCCACCCTGGGATGCAGTGTTGGGTGACAGGCTGGGGCTATACACAGGAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018701-3-4,3-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.3=75.9)
A:
NA
C2:
PF0008921=Trypsin=FE(39.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGGTACTCACAGCAGCC
R:
CTGTCACCCAACACTGCATCC
Band lengths:
178-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]