HsaEX6041529 @ hg19
Exon Skipping
Gene
ENSG00000116176 | TPSG1
Description
tryptase gamma 1 [Source:HGNC Symbol;Acc:14134]
Coordinates
chr16:1272196-1273594:-
Coord C1 exon
chr16:1273423-1273594
Coord A exon
chr16:1272652-1272917
Coord C2 exon
chr16:1272196-1272341
Length
266 bp
Sequences
Splice sites
3' ss Seq
CCAGCCACCTTCCCTCCCAGGTC
3' ss Score
8.56
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGTGTGGCCGGCCGCAGGTTTCGGATGCAGGCGGCCGGATCGTGGGGGGTCACGCTGCCCCGGCCGGCGCATGGCCATGGCAGGCCAGCCTCCGCCTGCGGAGGGTGCACGTGTGCGGCGGGTCACTGCTCAGCCCCCAGTGGGTGCTCACAGCTGCCCACTGCTTCTCCGG
Seq A exon
GTCCCTGAACTCATCCGACTACCAGGTGCACCTGGGGGAACTGGAGATCACTCTGTCTCCCCACTTCTCCACCGTGAGGCAGATCATCCTGCACTCCAGCCCCTCAGGACAGCCGGGGACCAGCGGGGACATCGCCCTGGTGGAGCTCAGTGTCCCCGTGACCCTCTCCAGCCGGATCCTGCCCGTCTGCCTCCCGGAGGCCTCAGATGACTTCTGCCCTGGGATCCGGTGCTGGGTGACCGGCTGGGGCTATACGCGGGAGGGAG
Seq C2 exon
AGCCTCTGCCACCCCCGTACAGCCTGCGGGAGGTGAAAGTCTCCGTGGTGGACACAGAGACCTGCCGCCGGGACTATCCCGGCCCCGGGGGCAGCATCCTTCAGCCCGACATGCTGTGTGCCCGGGGCCCCGGGGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116176-'2-3,'2-2,3-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.041
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.3=75.9)
A:
PF0008921=Trypsin=FE(39.0=100)
C2:
PF0008921=Trypsin=FE(21.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTTCGGATGCAGGCG
R:
CACACAGCATGTCGGGCT
Band lengths:
278-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)