HsaEX6041529 @ hg38
Exon Skipping
Gene
ENSG00000116176 | TPSG1
Description
tryptase gamma 1 [Source:HGNC Symbol;Acc:HGNC:14134]
Coordinates
chr16:1222196-1223594:-
Coord C1 exon
chr16:1223423-1223594
Coord A exon
chr16:1222652-1222917
Coord C2 exon
chr16:1222196-1222341
Length
266 bp
Sequences
Splice sites
3' ss Seq
CCAGCCACCTTCCCTCCCAGGTC
3' ss Score
8.56
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGTGTGGCCGGCCGCAGGTTTCGGATGCAGGCGGCCGGATCGTGGGGGGTCACGCTGCCCCGGCCGGCGCATGGCCATGGCAGGCCAGCCTCCGCCTGCGGAGGGTGCACGTGTGCGGCGGGTCACTGCTCAGCCCCCAGTGGGTGCTCACAGCTGCCCACTGCTTCTCCGG
Seq A exon
GTCCCTGAACTCATCCGACTACCAGGTGCACCTGGGGGAACTGGAGATCACTCTGTCTCCCCACTTCTCCACCGTGAGGCAGATCATCCTGCACTCCAGCCCCTCAGGACAGCCGGGGACCAGCGGGGACATCGCCCTGGTGGAGCTCAGTGTCCCCGTGACCCTCTCCAGCCGGATCCTGCCCGTCTGCCTCCCGGAGGCCTCAGATGACTTCTGCCCTGGGATCCGGTGCTGGGTGACCGGCTGGGGCTATACGCGGGAGGGAG
Seq C2 exon
AGCCTCTGCCACCCCCGTACAGCCTGCGGGAGGTGAAAGTCTCCGTGGTGGACACAGAGACCTGCCGCCGGGACTATCCCGGCCCCGGGGGCAGCATCCTTCAGCCCGACATGCTGTGTGCCCGGGGCCCCGGGGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116176-'4-5,'4-4,7-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.353 A=0.415 C2=0.041
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.3=75.9)
A:
PF0008921=Trypsin=FE(39.0=100)
C2:
PF0008921=Trypsin=FE(21.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTTTCGGATGCAGGCG
R:
CACACAGCATGTCGGGCT
Band lengths:
278-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains