HsaINT0172233 @ hg38
Intron Retention
Gene
ENSG00000121060 | TRIM25
Description
tripartite motif containing 25 [Source:HGNC Symbol;Acc:HGNC:12932]
Coordinates
chr17:56901419-56904488:-
Coord C1 exon
chr17:56904255-56904488
Coord A exon
chr17:56901579-56904254
Coord C2 exon
chr17:56901419-56901578
Length
2676 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
AACCCCCTGGCATGTTCCAGAAA
3' ss Score
4.98
Exon sequences
Seq C1 exon
ATGACTGCAAACAGAAAGGTGGAGCAGCTACAACAAGAATACACGGAAATGAAGGCTCTCTTGGACGCCTCAGAGACCACCTCGACAAGGAAGATAAAGGAAGAGGAGAAGAGGGTCAACAGCAAGTTTGACACCATTTATCAGATTCTCCTCAAGAAGAAGAGTGAGATCCAGACCTTGAAGGAGGAGATTGAACAGAGCCTGACCAAGAGGGATGAGTTCGAGTTTCTGGAG
Seq A exon
GTAGGTCGCCACAAGGCATTGTTGAATGTTTTTTTTTTTTTTTTGCCTGATGTCATGCTGTTGATGATAGGGCCCTCAAGGAGCGGGAGACTGGAAGAGGTCACTGGAAGCATCCCTGAGACACACGCTGTATTAGTTTTCTGAGCTGGGCAACAACTTACCACAAATGTAGGGGCTTCAAAAAACACATATTTATTCTCTCAGAGTTTCTCTGGCTCAGGAATCTGGACATGGCTTTATGGGTGGCCTGCATAGGGTCTCACCAGGCTACAGTCTGCGAGGGATGGCCAGGCTGTTTCCTTTGGAGCTCAGGGTTGTCTTCCAGGCTCATGTGGTTGTTGGCAGAATTTAGTTCCTTATGGTTGTAGGACTGAGGCCCCCCGCAATTTCCTGCTGGCTGTCTCTCAGATTGATAGCTGACTTCTTCAAGGCCAGCATGAGAATTTCTCCTCTAGAAAGATGCAATCCCTCTTTTAAGGTCTTTTACCTGATTAAGTCAGGCCCACCCCAGATAATTGCCCTTTGATGAACTCAAAATCAATTGATTTGAGATGCTAATTACACCAGCAATATTCCACCCCCTTTGCCACATGACATAACCTAATCACAGGAGTGATATCCTATTTCATTCACCGTCCTGCCGATACTGAAGGGGAGGGCATACTATAGGGTATGTACATCAGTCGGGGTCGGGGGCTTGAGGGCCATCTTAGAACGTTGCCTGCCACTCACACTCCACCTCTTCCTCCCATCCTTCCTCCAGCAGCTCCTGGAAGTGTGTGTTAGTAGTCCCTTTTGCATTGCTATAAAGGAGTACCTAAGACTGAGTTATTTATTTATTTTATGTATTTATTTTGAGATGGAGTTTCACTCTTGTTGCTCAGGCTGGAGTGTAGTGGTGTGATCTTGCTCACTGAAACCTCTGCCCCCAGGCTCAAGTGATCCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCGCACGCCACCATGCCCAGCTAATTTTGTATTTTTAGTAGAGACGAGATTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGAGATTACAGGTGTGAGCCACTGCGCCCAACCAGACTGAGTAATTTATAAAGAAAAGAGGTTTATTTGGCTCACAGTTCTACAGGTTGTACAAGCATGGCACCAGCATCTGTTTGGCTTTTAGTTAGGCCTTTGGTGAGGAAGGAAGCTTTTACTCATGGCAGAAGGTGAAGCTGGGAGCAGGCATGTCACAGGGTTAGAGAGGGAACAAGAGACAGAGGAGGAAGTGCCAGCCTCCGTTAAACAACCAGTTTGTGCAAGAACTCACCTGTTACCATGGGGAGGGCACCAAGCGGTGCATGGGGAATCCACCCCCACGACACGAACACCTCCCACCCTGCCCCACCTCCAACACTGGGAATCACATTCCAACATGAGATTTGGAGGGGACAAACATCCAGACTGTATCAAAGTATCTGTCTAAAGCATGGGCCCCCTGCTGTTTCTGGCCTCATGTCCCTTAACATGGCCTGCAGGGTCCTAGGTGACTGGGCCCCGCCTGTGCCAGCAGTCTCATCTCATATCATCCATCCCTGGCTCATGCCCTATGCACTCACTGTTCCCCAGACACAGTGGGTGTGGGTGGGATGCCATGCTGGGCATTCTTGCCTAGTGAGTCGTATCCTTCCAGGGCCTTGGATCCCATTGCCATGCCGTATCGGTGTTCCCAAGCATGCCACACTGTTTCTACAGTAACATTGGGTGATGTTGTTTCAGATGTGCATTTTTTCATGGCTGTTTTGACTGTAAGCCCATCTCTTATTACCCCCATTCATCCTCCTGCCAATCTGACCAGCACATAGCAGAGTGCTTGGCATATAGTGGTGTGCCCCATTGATTGAGTGACCTGCAGCTATACCTGAAAGACCCAGATTCCTTGTTCAGATCAGGGGGTGGGGAGACAGTGCAGGAGTGAATGGGAACCTTGTCTCTGTGCACTGAGGCCTGATGCGTGCCTAGTCTGGATGGCGTTAAGTTTCATCCCAAGTGTTCATTCCTGTCTGTTGGAGCAGCTGCCCCGAGCTCTCGAAGGATCTGAGTGCACATCTAGGCTTCTTGATACTGTACAACCCTATTTTTCTCAAAGTTTGGGACTTCCAGGAAGACCCTCCCTTCCCATAAGATATTCCCTGGCTGCAATCCACATCCCTTGAGATGTCCCTGTCTGTTACCAGAATGTGTGATTAGAGCTGTTCCCCTAGGATTGGGGTGGTCCTGAGTTTCCTGTGCTTTTCCACCTTTAGCTGGAAAAGTGGAAAGAACATTGTCCTGGGGGATCGGAAGATCTCAGTCCCAGCTGTGTCTGTGCCCCTAGCTGGTGGAGTTCCTGCCATGTCTAGACCTCAGTTTCCCCATCTGTAAGATGAGTGACCTCTGGGGTCCCCTCCAGCTCCAGATTACTGTGTCTTCAAGTGTCATTTAAACTCCTGGTGACCTCTGGCCTGTAATTTGAGAAGGCCAATTGGACTTAGCACTCTTGGGCATAGGGGAGAGCCTCCTGGGGTTGGTGAGGACTGAGCCCAGGTCCCCGTTTCACCAGAGCTGCCTGCACTAACCCCCTGGCATGTTCCAG
Seq C2 exon
AAAGCATCAAAACTGCGAGGAATCTCAACAAAGCCAGTCTACATCCCCGAGGTGGAACTGAACCACAAGCTGATAAAAGGCATCCACCAGAGCACCATAGACCTCAAAAACGAGCTGAAGCAGTGCATCGGGCGGCTCCAGGAGCCCACCCCCAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121060:ENST00000316881:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.291 A=NA C2=0.265
Domain overlap (PFAM):
C1:
PF149921=TMCO5=FE(44.3=100),PF0003816=Filament=PD(58.5=97.4)
A:
NA
C2:
PF149921=TMCO5=PD(23.0=74.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains