RnoINT0155757 @ rn6
Intron Retention
Gene
ENSRNOG00000002341 | Trim25
Description
tripartite motif-containing 25 [Source:RGD Symbol;Acc:1594396]
Coordinates
chr10:76353302-76355187:+
Coord C1 exon
chr10:76353302-76353535
Coord A exon
chr10:76353536-76355015
Coord C2 exon
chr10:76355016-76355187
Length
1480 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
AACACCTTGGCTTGTTCCAGAAA
3' ss Score
5.9
Exon sequences
Seq C1 exon
GAGTCTATGAAGAGGAAGATGCTACAGCTGAGACAGGAATATTTGGAAATGAAGGCTGTCATCGATGCCGCAGAGACCAGCTCCACGCACAAGTTGAAGGAGGAGGAGAAGAGAGTCTATGGAAAGCTCGATACCATCTACCAGGTTCTTCTCAAGAAGAAGAACGAGATGCAGAATCTGAAGGCAGAGGTTGAGCTCATCCTGGCCAAAGGGGACGAGTTTGAGTTTCTGGAG
Seq A exon
GTGAGTTGTGGCGAGGGAGGGCGCTGCTTGGGTGTGTGTTCTGTCCAGCATCGCAGAGCTGATGGGAGTCTGGACCTCAGAGAGTCAGGGCTTTAAGAGGTCATTTGGAAAGATCACAGAGACATACTGTATGTCTATGCTCTGTGACAGCTTACTGAATTGAGGGCCTTCAGAGAACCTCTGATGATTATCTCCTGGTTCCCCGGGCCCAGCGTCTGGGCGTGGCTTCCCAGCTGTTGTCATAGCACCAGAGGTCTAGCTGCAGGCTGGGCTGTATTGACTTTGGAGCCTCAGGGCTGTTTTCCAAGCCGCACCTGGCTACTTAGTTCCTTGGGGCTATAGATTGGGTGTGCACCTCCTTGCTGGCTGTCTGCTGAGGCCTTATTTCAGCTTGACAGCATGTGTTTGCTCAAGCCAGCAGAAACATTCCTCCCTCCAGGAAGGCCGGTGTTCCCCTTGAAGGTCTCTTACCCAATTAAGCCTGGTGGTCTACCCAGGATAGTCACCTTTTCGATTAATTCTTTCGTCTGGTTGGATATGTCCCTGTGGTGTTCCCCCTCTCGTTCCTTGTAGTTCATCGTGCAGTAATGTTGTTTCTGATCTGCCCTGTACTCAGGGGAGGGTTATGGGGGACTCTTGGGAGCATCTTAGATGTGTCACCCACTGTATAGGTGTCCGCCTTCTCTTACTGTCCTCCCTCACATACTCTCCGAAGATGCCTTTCTGAAGCACTGCCTCCCTGCTCTGTCTGGTGCTGTGCCCCTTAGCATGGTCCAGGAATGAGGGCCTTGCTGTTCGCACTTGGTCTCTGCTGTCAGGCCCTTGTGCTCTGACCACAACAGGTGCTATGCTCTTCATTCCTCAGACATAACCCCGAGTGGGAGCACCATGTTGATCTCCTCTGCCCAGTGGATTATGTCCCTTATGTCCCTGTTCCAGGACCACCGGGGTCACGCTGCTACACATTATTAGTGTTGCAGAGTATGGCCCACCCCCGGTAGTGCTGAAGACATCATTTCAGATGTGCTTGGCCTGTGTATCCTTTGGCTATAAGCCACATCATCTTGTCACTTGCCTCTTCTTCCTCACCTGTCTAGTTCAGGGCCCGGATCTCTGTGAACTACCTGGTTTGGTCCCCCAAGGACCCAGATTGCCTGGCTCAGTACAGGAGTGATGGAACCCCCTCTGCCCGTGATGCTTACTGGTACCTAGGTGGAGGTTTTCTGCTACCCCGGGAGCTCATTCCTGTGCCTAGGAACTACTGAGTTCTCTGAGAAAGGATTCAAGTCCTTGTCTGTACCCTTTTTCTTAAAGTTCTTAAAGGAGCACTCCAGCTAGTTCCAGGATCTTTCCCTTGTGATTGAGGCAGGAAGTTGTACTCACTGTTGCGTTAGGAAACATCAGTGGGGTTGATGAGGATGGAGGCCCAACCCTGGTTTTCCCCCAATCACCTCTGCTTAAACACCTTGGCTTGTTCCAG
Seq C2 exon
AAAGCTGCAAAATTGCAAGAAGTGTCAACGAAACCAGTCTACATCCCTAAGATAGACCTGGACCATGATTTGATAAAGGGGGTCTACCAGGGTGCATTGGACCTCAAGAGTGAGCTGAAGCTCTCCCTCAAGCAGCTACAGGAAAAGAAGGCTGAGGAGCCCTGCAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002341:ENSRNOT00000055674:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=NA C2=0.241
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGGCTGTCATCGATGCC
R:
GCTCCTCAGCCTTCTTTTCCT
Band lengths:
346-1826
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]