HsaINT0174158 @ hg38
Intron Retention
Gene
ENSG00000168026 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr3:39134218-39135174:+
Coord C1 exon
chr3:39134218-39134328
Coord A exon
chr3:39134329-39135092
Coord C2 exon
chr3:39135093-39135174
Length
764 bp
Sequences
Splice sites
5' ss Seq
GTGGTAGGA
5' ss Score
4.71
3' ss Seq
CTTTGTGTGTTTTCTGATAGTTG
3' ss Score
8.78
Exon sequences
Seq C1 exon
GTGATGCTGGAGCTGGCGCAGCTCTACCTGCTCCAGGGGCACCTGGACCTGTGTGAGCAGCACTGTGCCATCCTCCTGCAGACTGAGCAGAACCATGAGACCGCTTCTGTG
Seq A exon
GTAGGAAGCCCCCAGCACCCACTCCCTCCCCTCCCTTCCTCCCTTCCCAGGGTCCCTGTGACCAGATGCAGGCTACTTCCTAGCCCCGTAACCTCAGATGCCTCACTGACACACCTCTGAGGAGCTGTCGGGCAGAGAGGACTCAGTGCTGCACCTACTCTGCCCTTTAGCCGGAAGCGGTAGGCTGGCTGGCAGTGGGCAGCATCAATCTCCTGGGCCAGTCTAAGGTGGGGTGAGGTTGATTCACCCCAGGGGAAAGCACATTCACTGTAGGTGAAGGCAAGGGCGGGACAGGTTCCTGGGGCTTCAGGAAAAGCCCTCCTCGGTCCTGCCTCTCTCTTCCCTATCATCCAGACCTCCTCTAGGGCTGGCCCAGGAGCAGAAGCTGAGCCCTTGCAGAGCAAGGAGGGGTCCTCATCCCTACCTCTATTGCCTGGCAGTTCTCAGAATGGGTGGAGAGGCTTCCCCTGTAGGCTGTCAAAAAGCCCCACTGGTCTCTACCACTAGTCTTACCTTCCCATGTACATCCTCAACCCAACTCTTCTTGCCCCTCACCTTGGGAAGTCCTCACCTTCTGGGTGGGGGCCTGAGAAACCCTCAGGCTTCTCCTGTGGCAGCTTCTCACAAGGCCTAGGGAGGCTGCCTTGCAAGTCCTTTTCTACCTTCCCTTCTTACCACCATCACCCCCATACCCCCCGCCTCCCCCTACACCCATGCAAGCTGCCACTGTTGGGAAATCTGGAGCTTTGTGTGTTTTCTGATAG
Seq C2 exon
TTGATGGCTGACCTGATGTTTAGAAAACAGAAACATGAAGCGGCCATCAATCTTTACCACCAAGTCTTGGAGAAAGCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168026:ENST00000431162:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=FE(52.9=100)
A:
NA
C2:
PF145591=TPR_19=PD(5.9=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGCTGGAGCTGGCG
R:
CTGGCGCTTTCTCCAAGACTT
Band lengths:
193-957
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains