BtaINT0154289 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12511264-12512064:+
Coord C1 exon
chr22:12511264-12511374
Coord A exon
chr22:12511375-12511982
Coord C2 exon
chr22:12511983-12512064
Length
608 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
3' ss Seq
GCATCATGTGAATTCAATAGGTG
3' ss Score
5.12
Exon sequences
Seq C1 exon
GTGGTGCTGGAGCTGGCGAGGCTCTACCTGCTGCAGGGACACCTGGACCTGTGTGAGCAGCACTGTGCCGACCTCCTGCAGACTGAGAAGAACCACGAGGCAGCCTCCGTG
Seq A exon
GTGAGAGGCTGTGGGCCCGGGGCCCCACGACCACAGGGTGGGCTGCTGGGCCGTGGGGTAGCAGGGGACTCAGCACAGGATCCGTCACCCCGGACGGGAGGGGTGGGCTGGCAGCAGGGGGCAGCAGCGACCTCCCTTCTGGGCCACATCCGAGGGGAGAGGGTGAGGCTGATTCACTCCAGGGGAAACCACACCCGCTGGTAAAGGCCAGGCGAGGACAGGTTCCTGGGGCTTCGGGAAGTGTGAGGAAACAGCCCTCCCCAGTCCTACCCCTCTCTGCCCTGTCACCCAGACCACCTCCAGGGCTGTCTCCAGCAGAGGTGGGTAGCCCCCATTCCACCCTGCTGCCCGCATCTGGCAGTTCTCAGACATGGGTGGAGGGGCTGGCTCCACGGTGTCCACCCTCGGCTTTTCCTGCCTCCTTCCCTCCTCACCCCCACCGCTCTCCCCAGGCTGTCCCATCCTCTGTGGGACCTTCTCCCAGTGCCCAGAGATGCTCCCTAGGAAGTTCTCTCCTACCTTCCCTCCTTCCCTGTCCCCCCTTCCCACCACAGCCTCCCCGCCGCGCCCATGCAAGCTGCTATCCCAGCATCATGTGAATTCAATAG
Seq C2 exon
GTGATGGCTGACCTGATGTTTAGAAGACAGAAATACGAGGCTGCCATCAACCTCTACCACCAAGTCCTGGAGAAAGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477:ENSBTAT00000048382:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=FE(52.9=100)
A:
NA
C2:
PF145591=TPR_19=PD(5.9=14.3),PF134321=TPR_16=PU(39.7=96.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGCGAGGCTCTACC
R:
TGGTGCTTTCTCCAGGACTTG
Band lengths:
182-790
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]