HsaINT0175397 @ hg19
Intron Retention
Gene
ENSG00000130640 | TUBGCP2
Description
tubulin, gamma complex associated protein 2 [Source:HGNC Symbol;Acc:18599]
Coordinates
chr10:135107066-135111615:-
Coord C1 exon
chr10:135111456-135111615
Coord A exon
chr10:135107274-135111455
Coord C2 exon
chr10:135107066-135107273
Length
4182 bp
Sequences
Splice sites
5' ss Seq
TAGGTACGT
5' ss Score
8.17
3' ss Seq
AGCGCTGTCTGTGCCCGCAGGCA
3' ss Score
10.67
Exon sequences
Seq C1 exon
TCTCTGGAACTTAAAAGAAAGATGCTTCGAGACAAGCAGAACAAAAAAAATTCAGGCCAGCACCTCCCCATCTTCCCAGCATGGGTGTATGAGAGACCTGCCCTGATCGGGGATTTCCTGATTGGTGCTGGCATCAGCACAGACACCGCTTTGCCGATAG
Seq A exon
GTACGTGATGCGTTGATTTCCGGGCTCTGCCGATAGGTACGTGATGCGTTGATTTCCGGGCTCTGCCGATAGGTATGTCATGTGTTTATTTCTGGCCTCTGGGCAGGACACTTTGCAGGCCCAGCCCTCCCCCGGGCCTGCCTTTCCTCAGGTTGTGAGGCTCAATGCTGACTGGCTGCCGCCTCCATATTCCCATCCCAGGATGGCAGCAGAGAACGGCTCACCCGGGTCCTTGAGGGTTCTTCTCCTGTCCCTTCTGCCAGAGCTGTGGGGCAGCCTGCAGCAGGCCCCTCCCCAGCCGGCATCCTGGTGCCCTGGTGCAGACCTGCAGGCATCAGAATTGTGTGCAGCACTTATTTCTGAACAGCGATTCATGACTCCCATAGATTCTGTTACAGCAGTATTCTCAGAGGCCTCTTAAGTAGTGTTCGTGTAAACAAGATGCGGGTGAGACCACACAGTCATTTCAAGACGTTGTTATTGGGGACCTGGGATGTGTTCATCTGTCACAATTCATGGGTACATTTTTATTTTTATTTATTTTTAGTTCTTTTGAGATGGAATCTCGCTCTGTCGCCCAGGCTGAAGTGCAGTGGCGTGATCTCGGCACACTGCAACCTCCACCTCCCAGGTTGAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTGCAGGCGCCACCACGCCTGGCTAATTTTTATATTTTTAGTAGAGACGGGGTTTTGCCGTGTTGGCCAGACTGGTCTCGAACTCCTGACCTCTGGTGATCTGCCCACCTTGGCCTCACAAAGTGCTGGGATTACAGGCATGAGCCACCACGCCTAGTCAAGTACATTTTTAGATTGAAAAATGAGATTTCACAAACTAAGGACAGAGCATACCTGCTTATCTTGCCCCATCCCCGTTAGTCCAAACTCAAGAGGCAGCATGGAGCGTGGTCTGCTTCCCCACTACTCACGGCTCTGCAATGTGGGCACCAAGGGGCCAACCCTTGCCTTTGCCGGAAACCCTGGAGAACGGTGACGTGAAATCCACCTGTTTTCCTCATCCCCAAGCAAACAGAACCCTGCTGTAAGTTAATGAAAAGTATAGAAAAACCCTGCTGTAAGTTATGAGAAGTATAGAAAACCATGCTGTAAGTTAATGAAAAGTATGGAAAACAGTCTACTTCGGCCAGGCATGGTGGCTCACACCTGTAATCCCAGCACTTAGGGAGGTGAGGTGCGTGGATTCCTTGAGCCCAGGAATTCGAGACCAGCCTGGGCGACAGGACGAGACTAGTCTCTACAAAAAATGTGAAAATTAGCCGAGTGTGGTAGCGTGCACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGTGGGAGGATCACTTGAGCCTGAGAGGTCGAGGCTGCAGTGAGCTGTGATCGTGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACCCTGTTTCAAAAAAAAAAAAACAAAGCAGTCTGCTTTGTGCAGTGTTTTCAGTAATAATCCAACTGTGAAAACCCAACTGTGAAGACTTAGGGAGAGAGAGCTGCTCCCTTAGCGGGTACTCAGCAGGCAGCCGGGGAGTGGTGGGCACCTGAGAGCTCCTGATGGTACCCAGGCAGACTTCGGAGAAGGAAGCGCGGGGCCCTGCTGCCTGGGATCCCAGCAGTGGAGCCGGCTTTTTGGAGCAGGAGGCACTGAGGGGGTGTTCAGGCTTTCCCCCCATGTTTCCCCATTCAGGGAAGGGGTTGTACAAAAGAGGAACGCACTGTCCAGTAACGCTGCGGCGCCGTGGGCAGCTCTGAGCGTGGCGGTGATTGGCAGCAAGTGTGTGAGACTTGGCTGTGAACCCTGCAGCCAGCTCTCAGGTCAGGGTGCAGGTGCCCTCAGCACACTCAGCATCCCAGGAAAGGGGCGGCCTCGCCCCACCTCCCTCCCACGGCCACATACCACAGGTCCCAGGGGTGCCTCCGGTATTGAGGCTGCCTTGCCTCCCTTTGTCCGCACTGTCCCTGTCCCCTTGTGCCACCTGTGCAGACTTGAGAATGGAGCTCACTGTGGTGTTCATGCCGGGGCCTGTCTAGCTCCTCACCCCACGATTTGACCAGTGCCACACCACGGGACCTTGTGTGACCTCGGGCCTGCGTCCTCTGGAAAACAGCTGTGGAGTGGTGTGATGAGGACAGGTGCCTTGGAAAGCATCAGGACCTTGTGAGCACGAGGCAGCTGCCAGCACTCCACGTTCCCGCCATGCTCTCCTCACCGTGTGGGCATCCACCTGGCCAGCGCCGCCTCCGCAGTGCCCCTCCCTCTGGTCGCTCCCGCGCAGCATGCGAAGGTGTTATCTGCCCGCGTCCTGCCTTTTCCCCACACCGGCACGGAGGAGCCACGTGTTCGGTGGTCGTTCGGACGTGGTGATTTGCAGGTGACATCGCAGGTGTTGAGATGACACTGAGGATGTTGAATATTGGGGAGGTGAAGCAACTGACTCTTTTTTTGCTTGAGACAGGGTCTCACTTCGTTGCCTAGGCTGGAGTGCAGTGGCACAATCTCAGCTCACTGCAGCCTCGACCTCCCAAGCTCAGGTGATTCTCCCACCTCAGCCTCCCGAGTAGCTGGGACTGCAGGTGTGCACCATCACACGCAGCTAATTTCTGTATTTTCAGTAGAGACGGGGATTCGCCGTGTTGCCCAGGCTGGTCTTGAACTCCTGGAGTCAAGCGATCTGTCCACCTTGGCCTCCTAAAGTGATGGGATTACAGGTGTGAGCCACCATACCCGGCCTAAAGCAACCCTTGAGGTCCCTCCACAGCCAGGCGGCTGGATCCACACTAACCCCCACCCCACGGCACCTCCACCCCACCGTGAGGCTTCTCCCCACAAGGGCATTGGCCGAGGCTTCGTGGCTGTGGATGAATGAGGCCAACATGGTGGAAAGTAAGTGATGCAGAGTCAGAGGCAGTTCCTGGAAGATGCACTCGCTGTTCCCAAAACGCCAAGCCACACCCACTCCTTTAGGGATGGTAGACATTGGGGTCTCGGTTTTATTGGTCATCCTGAGAAGGCCACTGGAGTAATAGAAAGAAATGGAATTTGAAGTTGAAAAGTGTAGATCTGCCAGCCTGGGCAACACGGCAAGACCCCACCTTTACAAAAAATTTAAAAATTAGCCAGGAATGGTGGCACGTGCCAGTGGTCCCAGCTCCGAGGGAGACTAAGGATACAGGATCGCTTGAGCCTGGGTGCTCAAGGCTGCAGTGAGCTGAGATTGCACCACTGCCCTCCAGACTGGGTGACAGAGTGAGATTTGTCTCAAAAATAAAAAAAGGAAAAAAAAAAAACAAGGACAGTGTGGATCTGCATCAGGATTGAGGCTTTCGCTGAAGGGCTTGCGTTGGTGACGGATTGTAGTCTTGAGGCCTGCAGTCACAGGACACTTCCCAGCAGATGTGTGAGGCTGACAGAGTGATTTTGTAAACCGAAAGCCTGTTGTACGGAGCCTTCCTGAGCTGCCAGGGCCTGGTTTGGGTATGGTCTGGCTGGCACGGGGCCCTGTCAGGCCCTCGTGGGGACAGTTTCAACATCCTGCTTTCGTCTGGTGCTCCTCCCGGCCCCCCAGGCATGGCCCGCCTGAGGCTGTGGACTGAGAACTTGGTCCTGGGACCTGAGGGGTTTGGTGGGTGGCGGCCCGTGGCCGTCCTCGTGAGGAAGCTTAGCTGTGTGTCCTGCAGCCGTCTCATCCTCTCTGGATAGAAATTATCAAGAGTTTCTTAACGTTTAAGTGATAGCTTTTTAAAGACAAGGTTTTTTGTCCCAGAGTAACTCAGACTTACCAAGTTGTACTTACCAATGTTGAAAGTGCAGCTTCTGCTGGAGTCGCCTTTTCAACTCCTAACTTCACCTTTTCAAATGTCAGCCATGTATCTGAGCATTGCGGAGCCGAGTGTGGTGAGATCTTGACACCAGCCACCACGCCTCCCAGGCCGGCCCCGTCCTGCGGCGGTTGGAACTCAGCCTGTGGCTCCCCAGTGGGGTCAGTCAAAGCCAAGTGCAGTGGCTGACCTTTTATACCCATAAACAAAGATGAGCAAGAGTGAGACTGACCCGCAGATGAGGGCACGTGGCTGTGGGGGCATGGGAGTGGGGGCTGCAGAGCCACAGCGCTGTCTGTGCCCGCAG
Seq C2 exon
GCACGTTGCCCCTGGCCTCGCAGGAGTCGGCCGTGGTGGAGGACCTGCTGTACGTGCTGGTGGGCGTGGACGGGAGGTACGTCAGTGCTCAGCCCCTGGCTGGGAGGCAGAGCCGGACCTTCCTCGTGGACCCCAACCTGGACCTGTCCATCAGGGAGCTGGTGCACAGGATCCTCCCAGTGGCCGCCAGCTACTCCGCTGTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130640-TUBGCP2:NM_006659:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF041308=Spc97_Spc98=PU(10.6=78.6)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)