BtaINT0155332 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006395 | TUBGCP2
Description
Bos taurus tubulin, gamma complex associated protein 2 (TUBGCP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001098149]
Coordinates
chr26:25947404-25949939:+
Coord C1 exon
chr26:25947404-25947563
Coord A exon
chr26:25947564-25949731
Coord C2 exon
chr26:25949732-25949939
Length
2168 bp
Sequences
Splice sites
5' ss Seq
TCGGTAGGT
5' ss Score
9.09
3' ss Seq
GCTGGTGTCTGCGCCCACAGGCA
3' ss Score
7.52
Exon sequences
Seq C1 exon
TCTCTGGAACTCACGAGAAAGATGCTTCGAGACAAGCAGAACAAAAAAAACTCAGGGCAGCGCCTCCCAGTCTTCCCGGCGTGGGTGTACGAGAGGCCCACGCTGCTCGGGGACTTCCTGACTGGTTCAGGCACGAGCACAGATGCAGCTGTGCCCATCG
Seq A exon
GTAGGTGACGCACAGCTTCGGACAGTGGGGCCTCATTGGGACAGGGAAGCTGATCTCCTTGGAGGTGATGGGTGGATGGCGTCATACTGCCCCCAGGCCCTCTGCTGCCCTCGGCCATGTGGCCACATGCGGTACCCCCTGGCCTCCACATCCTGCCCCCCGCTGGTGGGTAGTGATGTGCCAGTGTCTGGGCTGGCTTGTGCCCAGCTCTCAGGAGCGTGTGTGTCTTGGGGCTTGGGTGACTTGGGGGCAGCGGGATCACCAGGGTCCTCCTCCTCGACAGTGAGTCGTGTCCCTGCAGGTTCTGCCATTGGGGCGATGGCCTTGGCCACAGGCACCACGGGCCGTTGGGGTGTGCGGGTGTCTGTGCCTCTCCCCCACGTCTCGTGACCCCTGGGGGCAGAGAGCTGAGTCTTGCCCTCCTGCTCACAGTGTACAGGGGAGACGGGGGCAGGAGGCATGGCCGTGTTCACAGGCGCTAGAGGAGCCTGCCCTGCAGCGGTCCCGTGTGGCGGGACTCATGGAGCCTGGTCCTCGGGGCCACATCCACGGGCGAGAAGCGGGGTGGGGGCTCTGATGCTGCAGCCTGGGGCCCTGCCTCCTGGGGCAGCTGGTTGGGGCATCTGCATGTTCAACACGATCCAAAGAGGTTCATAGGAAAGCCCCCGAGAGGACCTGCTCCCCGAGGTTGTGCAGCCTGTGACTTGATTTGCACGTTTGGATCAGTCAGAAGACTGATCAGTTCAAGACCGCGTGAGGCGCTGCTTGGAACCTTCTGGGGAGGCTTTGCTGGGTTGAGGTGGGGTGCGGTTTTTCGAAGCAGAGGCGGCCGGGCGCTGGTTCTTAGGGCGGGCGGGCTCACAGGGTTTCATGTGGCAGGTTTTCTTTGTAGCGGGATTGCTGTGCTGCCTGCTGGGAGGGGTGAGCTGTGCCTGAGGGTGGCCCCTGAGGCTACCTTGTATGATGCTGTTTCAGGGAGGACTTGGCCAGGACAGGTGGCCTGCCCATTTCCCTCCAACAGCCACACTGCATGGGCTCTGGTGGCGAGATCAGCGTCTGTCCCATGGGCCCTGTGTCACCTTCCTGGCCTCCGTCACACCCTGGCCTGGCACCACAGGCCCCGGTGCCATCCGTGCCAAGATGCCCGTGAGCATCACAGTCATCCTCGGCCTTCCCTGCTGTCCCCCTGACGTAGTCTTTCCTGGGGAGCCCTGCCTCCTCGTGTGGTGTGCAGCAGCCCCGCCAGCTGCGTGGTGCCCCCCACAGTCACCTTGACACCTGAGTCCCTTCCTACAGCAGAGGCATGCCCCCCGCCTATGACTAGGCTGATCTCCTCACGCCAGCCTCCAGCTTCCTCTGCTTGGCTGGGCCATCCCGCCCATGGCTGGGCGGCGTAGACTCGTGTCTTCACAATTCCTGGCCTGTTCCCAAGGCCGTGGGCACAGGCGCCTTGTCGCTTCTAACTGTGTGTGTGGTTCCCGCTGGGTCCCTGAGCCTCGGGCTCATGTCCTGCAGACACAGCCAGTTTCCTGGAGTCTGAGCAGCACGTGGCTCTGTGCCTCGTCCCTCCCTGGCCCCCACCCCTGCCTTGGGGCCTCAGCCAGAGCTCCGGGCTCTCAAGTTTCCCCTTTCTGGGGGACCCCGTCTGCGAGGAGGGATCTGCTGTGCCCCGTGTGGCCCAGCGCGCTGTCTATGTCCCTCTCCTGATTTCCGCATCCGTGACGGGCTCCAGCTTCCCTGGCGTCTCCTCCTGGCCACGAGGTGACCGTGGCGCCTGTCCTTGTCCCTCCCGTGGCACAGCCTGGTCCCGGCCTTCTGAGCGACCCAGCCTCGCCAGGTTGTGAGTGTTGTGAGCACAAGACGTGTTAGAAGCACTTTGTCACTTTGAAGATGAAGCGAGTGTGTGTGGAGGGTTTTACTTGCTTTAAGGCTCTGATCGTCAGGTCCAGACTCGTCCTGTGGTCCCTCGCTGTTGGGTGGTCAGTGCCTCTGCTGGTGGTGGTTTTGGACTCTCAGCCTTTGGTTCCGACAGGATCGGTTAACCCAGGCGGCCACCTTGGTTTTCACGTTCACAGCGCTGGAGGAAGTTACATAGATGGAGGTGGGTGGGGAGAGAGGCCAGTGGAGCGGGCTCTGGAGGCGAGGCCTGCTGGTGTCTGCGCCCACAG
Seq C2 exon
GCACGCTGCCCCTGGCCTCCCAGGAGGCGGCCATCGTGGAGGACCTGCTGTACGTGCTAGTGGGTGTGGATGGCAGGTACATCACGGCCCAGCCCCTCACGGGGAGGCAGAGCCGAACCTTCCTCGTGGACCCCAACCTGGACCTGTCCATCCGAGAGCTGGTGAGCAGGATCCTGCCTGTGGCCGCTAGCTACTCCACCGTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006395:ENSBTAT00000008383:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF041308=Spc97_Spc98=PU(10.6=78.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]