RnoINT0158287 @ rn6
Intron Retention
Gene
ENSRNOG00000018137 | Tubgcp2
Description
tubulin, gamma complex associated protein 2 [Source:RGD Symbol;Acc:1309597]
Coordinates
chr1:212344972-212350652:-
Coord C1 exon
chr1:212350493-212350652
Coord A exon
chr1:212345180-212350492
Coord C2 exon
chr1:212344972-212345179
Length
5313 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGT
5' ss Score
7.76
3' ss Seq
CTGTTGCCTGTGCCTTGCAGGTA
3' ss Score
10.44
Exon sequences
Seq C1 exon
TCTCTGGAACTTACAAGAAAGATGCTTCGAGACAAACAGAACAAAAAAAATTCAGGCCAGCCCCTCCCAGTCTTCCCAGCATGGGTATATGAGAGACCAACACTGGCTGGAGATTTCCTGATTGGTTCGGGCTTGAGCTCAGACACAACTTTGCCTATAG
Seq A exon
GTATGTGATGAATTTCTGATGCCTAGGAGTTTCTCTGTTTGCTTGCATGTGCCTCAGCTGGCTGTGAAACCATGAGTGACACACTGAGGCCCGGAGAACTTGAAGTGCTTGTTCTTGCATTCCTCCTGCCAGAGCCTTAGGACAGTTGGAGCTGGCCTCTGGGCTGTGCACGGGTGTGCAGACACAGGGCCAGCAGGACACTTTCCTGAAAAGTGATCTGTTATTGCCACATTCTACATCCAGCATTAGTGCTGTGCTCACAAAGTCTGAAAAGTTGTATCTGTTGAACAGCTCTGCTGTTTGAGAGCAGGTTCTTGGGATTCTAAGATGTGTGTATTGGCATACCACAGACTACATGCAACCCGCAGAGTCTTCTCAGATCAAAATATGAAAATTTGGATTGGCATAGCTTATGTGTGGTTTCCTGCCCGTTTGATGGCGGCCCCAGTTTAAGAGAATCCTAAAGTGGTGTGCCTTGCCACAGCTCATGAGTTCTGTATGGTGTTAGTGCAGAGGTCTACTGTCACCTTTGGAAACACCTTATAGGGCTGTTAGACAAATTGAGTGTTTGCTCCTGTCCCCAAGCAGACATGATTCTGCTGCAAGTTCATGGGACGGTAGAGACGGCTGTCTTTCTGCTGTGGACTTGTTTGCAGTGTTGGCATTTACCTAGTTGTCACCTATCCTGTCACCTGGTAGAAGTTATTGTCCCCTTTCCTGTCTGCTCTCCTTTCTCTACACAGACTCCTGTGGTAAGCATAATCACCATCCTTGACAGAGCCTCAACCTTAGACCTTACTTTTCTGCATAGCGCGTGTCCCTCAGGGTTCCTTCCTATTGGATTTCACCATCTTCAGCCTCACTTAGCATCATGAGTCATCATTTCTCCAGTTGTTCCAACTCTGCCCTTCCAACCACTCTTTCCAGCAAGCTCCCTGTCTTTTTCCATTGCCTCTGCTCCTTGGGATTAGTCCCAGATCTACCTCCTCCATCTCTGCTTTGAAGTGTCCAGGTAAACTTTATGTCACCTAAGGCCATTCTGCCGCTGTACCTGCCACCTCCCCAATGGCTTACTGACACCTGTAGTTGTTGAACGTTGAAAGGCAGTGAGTGTGCCCAAGCAAGCAGTCTTCCTTTCATTACCTTAATCCCAGTGACCATGGCTTCATGTGGGGGCACGGATCTTGACAACCTCATCTTTCTCCTCTTCTTGTAGTTCCCATACTTCCTGTAGGCATAGCTAGAGCCCACTTTCAATACAGGGCTGAGTCTCAGGTGAGCCTGTCCAGTGACAGCCCTAAATGCCCCCACCCTCAACAAAACCCTGACAGTTTGCCCAGGCTGGCTCTTCTGGCCCTTGAGCTCCATTTTCCACTTAGGCCCAACATGCCAGTCAGATAAGCCAGGTCCGTTACCTCAGGTGTTTACACATTGTATTTCCAACCCCTTCAGAGCGCAACTGAAGATCGGCAATAGTCACCCCTTCTTTGTCCTTCCTTGTCACACCTAATACAGTGTATGATGCTGGTTCATTTTGTTTGTTTGTTTTTTTTCCCTATACAGGCATGCTGATATGGGGACAGGGCTAGCTAGCATCTACTATGCTCAGGTGTTGATTAGAAGTGCAGAGTATCTGCCAGACCCATGCTTGGCAGTGAGGAGCTACCAGTGGTCATTAGAGTAAGCAAGGTGATTCGCAGCATTCCAGTAATGATATAAATACTGAGGAGTGGAGAGTCCCTCTGTCTCACCATGGAGGACTTTTGCTGCCCATGAACAGAGAGTGGTAGGCTCAGAAATAACCTATACAGAGGTCAGAGCTATTCTTAGAAGGTCCTGCCATTTAGGAAACACACAGAACAGCTGTCACAAACCATAGAGATTAGAATTGTGGTTTTGCCCATCAAGAGGAAAGCCAGTGGAGTAAAGTGAGAGCTGGAACTTGGAATTCAAAGGCATTGCTATAAGCTAGAGGTCTTGACCTGGGACTGGAAGGCAGCCGCACATAGAGCTTTGCATGTGCCACTTCTGCCCTCTGCAGTGGTGGATATGCAAGGCCCACGAAGAGGTTTTATGAAGTGCAAAGTGCATTGTGTGACACTTCTCCATGCTTTCAGGCCCAGGTTGTTTCCTGAATGACACCAGCACATGTCAGGCATGTGGGGACAGGAGGGAAAGCCATGCTGAGTGAGACAGGATGGCTGAGACAGAGCCACCTCAGTAGGTGAGCTGTGACCAACATCTTGTCCTGTTGATATAGAAGTAAGCATTTTCTTGACATTTGACATGTGGTGTCCTATTCATTTGTTTTGAGTTTTATATAGGGGCTCAGTATGTAGCCATGGTTGTCCTGGAAATCACTGTGTAGGCCATACTGCCCCGAGCCTCTCAGAGATCCACCTGCCTCTTCCTCCCAAGTGTTGGGACTGAAGTTGTATGCCACCATGCCTGGCCAGTGATGTCTTTTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCCAGTGATGTCTTTTTAAAGGAAACTTTTTTTTTCTTTTTTTTACAAACTGTAAGAATGATCTTTTATCGAGGGGGGGGAGGGTTCATTAATCTTTCTTGGCTACCGCCTTCCTCATGGCTGCCAACACGTTGCTCAGCTTCTCTTGCTTTCTCTTGGCATGGACTTGCATGCCTCCCCACTTCTTGCTGAACTTGAGTGCGCTCTTGTCTTTGGACACTTGAAGCAACTCCACTTGAAGCCACTTGTAGGGTGCGAAGCCACGCACCTCCAAGATCATGTCCCACACAAACTTGGTGTGCTTGGTGAGGCGCCAGCTGTGTCTCGACTTGCTGACACTCTTCCTCACCTTGTGGCTCTTGTTGAGGCCCACGGCCATGGGGTAGTGCAGGGCCATGGCTGCTGCTCTCCAGTGGTGGCCTGGCTAAGAAGCAAGGAAACCTTTTTCATTGGAGAAGTACAGACTTACTCAGCTGTGGTGACAAATGCTGCACACTTAGGTTGGGTTAGCTTTCTCACCACTCTGACCTAATACCTGACATATATGACTTATGGGAGGAAAGATTATTTTGGTCTCATGGTTTTGAATGTGGTCATTGGCTCTGTTGGGTCTGCTGAGACAGAATTTTGGCACCTGGACCCTGTTTACCTTATGGTGAACAGGAAGCAGAGAGCAAGAGTGGGCTAAGGACCAGGTATAACCTTGAAAGTAGACCCACTACTACCCCACTTCATCTAACGATATCTTTTAAAGTTTCCAGGATCTCCCAAAATGGTGGCGCCAGGTGAGACCAAGTTTCATATAGGAAAACATTTCATATGCAAGTCATTTTGTTTCTTGTTAGCCCTCAGAGGTCCATGGCCATCTCATGATATAAAACACATCTAGTTCCTCTCCAAAGTAACCAAGTCTTAACGTTTCCACCATTTTTCAAAGTCCAGAGTGTCTCTGAAACTCAAGGAGTGAGCCTCTATAAAACAAAAGTTTCATAATTCCAAGATACAGGACACAGAGTAAGCACTTCCACTCTATAGGACTCAGAGGAGAATAGCTGGGCAGGAGCAGGGGCTGGGGTCTGGCCGGTTCTTAAGGCATTCACAGGGCCTCTTTCCTGTGGTTCAGATGCAAAGCGGTTGGCTTTATTCTTCTAGTACCAAGGACGGAGCCTAGGGGCTCCTGAGTATCAGGCAGACATAATCTCCAACAGCTGGCTGCTGCTGCTTTTTGGTTTTGCCTTTGGCTTTTTATTTATTTTATGGTAATGTTTTTCATTTTGATCACGTTTTCTCTTCCCAAACTCCTTCCAAACCCTCTCACCTCCCTACCTATCCAACTTTATCTTTCTCTCATGTTTAAAACAAAATTCAAAGCAAACAATCAAAATACCAATAAGACAAATACATACATACATACATACACACACACACACACACACACACACACACACACACACACATATACATACAAAAACCCCACCAAAAAATTCTTGAAGCTAATTTTGTGTTGGCTAATAGTCCTAGGCATGGGGAGTGCCCTATGATTTATGAACCCAGTGACACTCCATTGGAGAAACAGATTTCCCTTCTCCCAGTGAATATCAACTGCAAATTGCTTCTTGCTTAGGGTGGAACTTCATGCCTACTTCCCCTTCAGTGCTGGAACCATGTCTTGTCTAAACATGTGCAGGCCTTGTGCGTGCTGTCACGGCCTCTGAGTTCACACGCGCGTGTCTGTCAGTCCTGCTGTGTCCTAGAGACACCGTTTAATTGCGTTCTTTTTAATGGTGCTGAACTCTATCTAAGCCCCAGGCAGTTTTTCATGGGCTTTCCTAATCTATCTGAAATTCCTCAAATCTTCATGCTTTGCTCCTTTTCCCCCCATTCTCATTGTAAAACCCATATAAAAGGAACCTCGAATAATCTTGTCATAGCTTGAATAATGAATGCTTCAAAATTGCCTCACCAAATTCAACTGATCTATTACACTTAGGCTCATACTCACAAATTTTCAGGGCACAAATAGTATAAAGAAAAATTCTTTGCTAAAATGTGACCCAAGTGGCTTCCAGGTTTTGTTTCTATCTGAAGCCTCGTAAGCCTGCAGTTCACTCTAATGGTATCTGATCATCTGAGCTTACAAGAATTGCCCATAGAGTTTGCTTAAATTCTAGGCTTCTTCAGCCTGTATTTCTAAACATTTCCACTTTCTTCCCACAAGTCAGTTCCTAAGAACCACTTGGTCAGGTTTAGTCATAGCAACAATGTAACTTATTGGTACCAACTTTCTGTATTTGATACTTTTGCATAGCTGTGACTAGAGAACATCTTAAAAGTAGAAGGGGTTTTGTCAGGGCCCACAGTTTCAGATTTTAGCTAATATCCTTGGCTCCATTGATTCTGGGCCCTCATCATGATCAGAACATCAGCGCATCAAGAGAGTGTGGTGGAAAGGTTGTACCTTGTATATAGACAGGAAGCAGATCAAGGAAAGAGCTGGGGATCTGTAGTGTCCTACTTCCTATAGCCATGTCCTATGTCCTGAGCTTTCCAGAACCTACCAACTAGTGCCACCAACTGAGGAAAACACAGAATCTGTGCAACATGTCATATTCAAATCATAAGAGGAAATCACTTCCGCGTTCCATTCTTGTGTGTACAAGAAAGAGGTCACAGAGGAGGTTGGTAAGGCTATAGAGCCAATGGCATGGGAATCTTAGCATCTACTGTTGCCTGTGCCTTGCAG
Seq C2 exon
GTACATTGCCCTTGGCCTCCCAGGAGTCAGCAGTGGTGGAAGATCTGCTCTATGTGCTTGTGGGAGTGGATGGCAGGTACATCACTGCTCAGCCTTTGGCTGGGAGGCAGAACCGTACCTTCCTTGTAGATCCCAACCTGGACCTGTCCATCCGGGAGCTAGTAAACAGAATCCTCCCTGTGGCTGCCAGCTACTCTACTGTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018137:ENSRNOT00000024573:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.253 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF041308=Spc97_Spc98=PU(10.6=78.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]