HsaINT0175980 @ hg19
Intron Retention
Gene
ENSG00000117143 | UAP1
Description
UDP-N-acteylglucosamine pyrophosphorylase 1 [Source:HGNC Symbol;Acc:12457]
Coordinates
chr1:162551077-162557458:+
Coord C1 exon
chr1:162551077-162551249
Coord A exon
chr1:162551250-162557264
Coord C2 exon
chr1:162557265-162557458
Length
6015 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TGTTTTTCTCTGGTGGACAGGTG
3' ss Score
8.13
Exon sequences
Seq C1 exon
ATGGGAATGGTGGTCTTTATCGGGCACTTGCAGCCCAGAATATTGTGGAGGATATGGAGCAAAGAGGCATTTGGAGCATTCATGTCTATTGTGTTGACAACATATTAGTAAAAGTGGCAGACCCACGGTTCATTGGATTTTGCATTCAGAAAGGAGCAGACTGTGGAGCAAAG
Seq A exon
GTAATGCCTTTCTCAACTATGGTGAGGCTTTTGATGGTCTTGCTCTGTCATATACGCATTCCAGAAGTCAAACCAAGTTTATTAGGGTGATTTGAATATTTTAGAACCATTTATCTCTCTAAAGTAACTAAACGGTCCCACACCCACTTTTTTTCTTAAATTGGCAAGACTTGATTCTAGATGTAATGTTGTATACTTATCACAGGTAAGAGTTTAAACTATGTGAGGAGGATTTGTAAGTACTTCGGAAAGTGGTCATCACTAGACCTGGGTTGGATTCATTAATATCAAATTGTGTTCAATCAGATTAACCCAACTTTTTTCCTGTGACAAAGTTATTGGAGTAGGTAAGGAAAATGTGGTAGAAATAACAGATTTAGACTTCCTAAGTCAGGTGACAAGGTATCTTACGATGTTCTTTCGAATAAGATAGAAATATGCAAGTTGGGCATAAGGACAATTAAAGAGGTGAATAACTGCTTGAATGACCACACACAGACTGATACTAAGTTGGAGGGAGGTTTGTAATGATATGTAATGAGTCTGTTCTTGGCATTGTACTTTTCAACACGTTTTTAGTTGTATAGGTGATGGCATGTCTTTATGGTAGCAAAAAATATATATATTATAGCTAGAAATAAAATAGACAGCAAACATGCAAACCTTTAAAAACACTTTGGAAGACCTAAAAATACTGATATAAACATTACTAGAAGTCTGTATAGGTATCCATTCTCATCAAAAACAGTGTAATAAAAGCCCAGTCAAAATCTCAGTGAGACTATTTTGGGGACACTTGACAGAATGATTGCAAAGTTTAGAATAAACATGTAAAGGTGGCCAGGAAAATGTTGAAAAAGGATGAAGATAAGGGAGGAAAGGGGGCCGAAGACCATCTATCAAGCATTAAAAGGAATTGTAAATTAAAAGAGTGTGGTACTGGAACCAGAATAGAATGACAGATTAATGAAAATAGAGTAGGTCAGTCAGAAACACATCTGTGTATGTATAAGAAGAACACATTTTATAAAATATGGCATTTTGACTCAGTGGAGGAAATGAATGAAATAACTGGCTAACAATAAAGTAAGATCTCTCTGTCAAAGCTCATACAAATATCAGTTTTAGGTGGATTACACAGTTAAATATTTAAAAATGAAATCATAAAGGTATTAGAAGAAAATTAGAAGAATTTTATAATTGTGATGCAAAAGGAAGACCTTTCTACTGAAAGCAGTAACCATATAGGCTTCTGACAAAAACAAATTCGATTTCAAATTATTTTGAAATATCTGTATTTAAAAAGAAGATCTGCCAAAGAAGTTATTTCTCTCAAAGTTAATCTAGAAATTTTATGCAAAGTCTCATTGGAAGCCGAAATCTTAAATTTACTGATACAAGTTTTGAGAGATTAAGCTGATAGACCTAATAAGCCTCCTCTGGACTCTGAAAATAAGTGTTGGTTTAGTTCAGTTATTTAAGACTTCTATCTGTTCCAATACTCTGTGAGTATCTGAACTGTATTTTTTTTTTTTTTAGCCACAGACTCACTATGTCATCTAGGCTGGTGTGCAGTGGCAGGATCTCGGCTCACTGCAACCTTTGCCTCCTGGGTTCAGTGATTCTCCTGCCTCACCCTCCCCAGTAGCTGGGATTATAGGCACACGCCTTCCACTTGGTGTCACTCTTTTTTTTTTTTTTTTTTTTTTTTGAGACGCAGTCTTGCACTGTCGCCTGGGCCGGAGTGCAGTGGCATGATCTTGGCTCACTGCAACCTCCGTCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTATAGGCACCCACCACCAGGCCCAGATAATTTTTTTGTATTTTTAGTACAGACGGGGTTTCACTATGTTGGCCAGGCTGGTCTCGAACGCCTGACCTCATGATCCACACACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCAGCTGGTGTCACTCTTTTTTCCTAAAATAGAAACTTAAAATTGTACTGTTACGAGCTTCAGAACCAATTTAAACTTTATGCAATCAGAGAGTGTTCAACCTGGAAGGGACCCCAGAGATCATCTGGTCAACCCCTTTGATCTCAGAAATGAGAATCCTGAGTTCTAGTACTTTGTTTGTTTATTTATTTATTTATTTATTTGACAGGGTCTGGCTCTGTTGCCTAGGCTGGATTGCAGTGATGTGATCTTGGCTCACTGCAACTTCTGCCTCCAGGCTCAGCAATTCTCCTGCCTCAGCCTCTGGAGTAGCTGGTACCACAGGCGTGCACCACCACACCTGGTTAATTTTTCTGGGTCTTTTTGTATTTTTAGTAGAGACAGGGTTTCACTGTGTTGCCTAGGCTGGTCTTGAACTTCTGACCTCAGGTGATCTACCTGCTTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCACCCGGCCAGAGTTCTAGTACTTTATAAGACTCAGGCTCAAGGTTCTTTATCACATTAACAGAGCCAGGATTAGAGTTCATGTTTCCCAACTTCCTAGTCTTATATTATATTACATTATAGAACCATACTCTTCAGATTAGTTTTTGCTGACAGTTCAAAAATCTTTAAACTGGTGTGCTAACTTTTGTGAGTACACTAATCATGCAAAGATGCAAGTGTTAAGTCACTCCTCTCCATTACCTGTGGGCTCTGTAGGATAAATCCAGACTCAGTCTTCCTTGCAAAGACACTCACTGTTTAGTCCTGTGTCTGGCATGTAATGTAGTAGTCATTCAGTGAATGAATAAGTAAATATTCAGATGGAACCAAAACATGACTAGACTGGCATATATTAAAATCTTTTAGAAATGTTAGAAGCCGTTTACATAATTGCTCCCCTGCCCTTTTAAAATAAGAAAATCAAAGCATTAAAATATGTATCTTAAAGCACCTAAGTTAGGGGATGATTCATACTGTGGTAGTAGAATTATTTGCAGTACTTTATTTTTATTGTATTTATTTATTCTGAGACAGGATCTCACTCTGCCACCCAGGCTGGATATGCAGTGGCATTATCATGGCTTCACTGCAGCCTCGACCTCCTGGGTTCAGGTGATCCTCTCACCTCAGCCTCCTGAGTAGCTGAGACTACAGGCACCCAGCACCATGCCTGGCTAATTTTTGTATTTTTTGTAGAGGTGGGGTTTTGCTACATTGCCCAGGCTGGTCTTGAAATCCTGGGCTCAGGTGATCTGCCTGCCTGAGCCTTCCAAAGTGCTGGGATTACAGGTGTGAACCACTATGCCTGGCCTGCAGTACTTTAATAGGCCCCTGTCTTGGTGCATTAAGTATTTTTTATGGAGTGAAGAACATGAGAAAAGACTGAAAGAGTGAGGTAGTTTGCAAAAGTACAAAGTTAAAAAGGTAGGAACCATTGTTAACTGAAGATCATTTTGTAAAGCAATTATAGTAACTCTGAGGTTAAAGTGTTATTTTGGACTCAGCTTTTCTCTCAGCTCACTGCAACCTCTGCCTACTGGGTTCAAGTGATCCTCCTGCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGTGCCACCACACCTGGCTAATTTACCATGTTGGCCAGGCTGGTCTCTTAACTCCTGACCTCAAGTGATCCACCTGCCTTGGCCTCCCGGAGTGCTGGGATTATAGGTGTAAGCTACTGTGCCTGGCCCTGGACTCAGTTTTTCTGGATTAAACTTATGAAATATTGAGTACACCTTTTAAGTTTATACTGTATATCTTTTTTTTTTTTTCTGAGATAAGAGTCTTTCTCTTGTTGCCCCAGCTGGAGCGCAATGGCGCAATCTTGGCTCACTGCAATCTCTGCCTCCCAGGTTCAAGTGATTCTGCTGCCTCAGCCTCCTGAATCGCTGGGATTACAGTGCCTACCACCATGCCTGGCTAATTTTTTTTTTTAATTTTCAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGATGATACACCCACCTCAGCCTCCCAAAGTGCTGAGATTATAGGTGTGAGCTACCACGCCCGTTCTATACTTTATATCTTTTCTGTATAATATAAATGGATTCCCACTTCATTCAGTTTACAAATGCTTTCTTCTGTAATGTAGACTTTTAAAATATTTAGAGGTTAATAGTTGCCATAGAAGTAAACCTTTGGGAAATGTAAAATGTGAATATGTATATTTTTATTTTTATGGCTGGTTGGGAGTAGGAGTATATAGTGGTGACTGGAAAATAAACCTGTGTGCGTTAAAAAAAAAAAAGAGAGAGAATAAGGGGAATCTATCCCAAATTCCCTGCCTAGTAAGATACCCACTGTAGGTAGAGTACATGAAGTAAGAGATGGTGATGGGTTGGTAGATAAGAATTGTAAATAGGCCCATGATTGATTTAAATAATTTGCTGCATAATGTTCCCCTTCAGTTTAATCTACTTCCTCGGTAGAAAGTTTCTTTTCATTAAGAACTGTGTTCCTTTCAGGGTGGCAAACAGTGAACCACACAACAGGCTTACTTATCCAGCAGTCCTGCCTCACTGAGCTGGACTCAGTGCCTATATCTCTAATTGCTGTGTAAATGAAGTTCTCAATAGTGGCTTTAGTTTTCTGGATGAGACTGTTACTGACTGTATTTATTTTAAGAAATCAGTTGTTGAAGAAAAGTCTTAACTTTATTAATATAATTTCATGTCTACTTAGGATAGACTTGTCAAATTGGGGACAGAGTTTTAAACATATTTTGAAGCATGCTGAATTGATAATTAGACTGGACAAACAAAACAATACCTTCAAATAGATAGGGATTTTTGAGACAGGGTCTTACTCTGTTGCCCAGGCTCGAGTGGAGTGCAGTGGTGCAATCACGTTTCACTGTAGCCTCAACCTCCCCAGACTCAGGTGATCCTCTTTCCTCAGTCTCCCTAGTAGCTGAGACTCCAGCATGCCACCACGCCTGGCTAATTTTTTTATTTTTTAAATAGAAGCCAGGGTTTCACCTTGTTGCCTAGGTTGACAAATATTTTTTATTGTTTGTTTCTTCGGTTGGATATTTATCTTATCTGAACCTTGATTTTATATTAGTGCATTGCATATAGTTCTTTTATAATTTTCTTCTAAACACTTAAGTCAGTGATGTGTGGGATTAGTGTGGTGGCATACCAAAATCACTTGTGAGGTTTTTAAAAATTACATATTCTTAATTTTCCCTCTGATTTTAGTATACCCTCTTTTCTCAGCTCCCCATCAGCCCAGAGCCATTGATAAATTATCACATCACTGGTTTTCAGAATTATTTTTTTGAAGTATAGAATCACTTATTTCAAACAAAATTGAGTATACAAAACAGATAAATATGGGTGGGTTTTCTAATTAAAGTTGGAGTGGGAGGCTAGTGACCTGCCTGCTCTAAACCCCTTTACCTCCTACTCAGGTCCCTGAAACACAAGGAAAATGCCAAAATTAAAGAAATGCTTTTTTCAAATGAAATATCGGGCAATAGAAAATGAGAGACAAAATGCCTAACTTAGGTCTTTTGTCTTGTGAATCCCAGAGAAATTTCATTTTATTTATTATGAAAGTAATTGAGGTGGTTAAGGATAAATTAAATAAAAAGTACAAGATACATGGGGGATGTTGACTCCTGATGTAATTATTCCCACTCCAATGTGATTTACTCTGTGCTAGATATATGTATATGATGGAATTTCTAGCCCAAGGTTTAGTTAGGTGATAAATAGGAAGGAAATAATATACCTCATTTCCAGTTGGAAAGTGCCTGTCAAGGTATATAAAGATGGATAGTTGATTGTCTAAAGTTAAAGATTCTTCTTGGCTTTATACCTTTTAGTGTAAGCAAAGTTGTAAATGTCATCTTTGACAATGGCAAATCTCCAAAGAAACATTTAATTCAATTTCCTCCTCTACTGTTTTTCTCTGGTGGACAG
Seq C2 exon
GTGGTAGAGAAAACGAACCCTACAGAACCAGTTGGAGTGGTTTGCCGAGTGGATGGAGTTTACCAGGTGGTAGAATATAGTGAGATTTCCCTGGCAACAGCTCAAAAACGAAGCTCAGACGGACGACTGCTGTTCAATGCGGGGAACATTGCCAACCATTTCTTCACTGTACCATTTCTGAGAGATGTTGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117143-UAP1:NM_003115:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(13.3=100)
A:
NA
C2:
PF0170413=UDPGP=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)