HsaINT0176123 @ hg19
Intron Retention
Gene
ENSG00000182179 | UBA7
Description
ubiquitin-like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:12471]
Coordinates
chr3:49848417-49848888:-
Coord C1 exon
chr3:49848706-49848888
Coord A exon
chr3:49848525-49848705
Coord C2 exon
chr3:49848417-49848524
Length
181 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
GCCTGAAGTGCTGCCCCTAGGCA
3' ss Score
4.47
Exon sequences
Seq C1 exon
GTTGATGCAGAGACTGTGGTGGGCCTGGCCCGGGACCTGGAACCACTGAAGCGGACAGAGGAAGAGCCACTGGAAGAGCCACTGGATGAGGCCCTAGTGCGGACAGTCGCCCTAAGCAGTGCAGGTGTCTTGAGCCCTATGGTGGCCATGCTGGGTGCAGTAGCTGCCCAGGAAGTGCTGAAG
Seq A exon
GTGGGCAGAGGCATAGGTGTGGGGGGTACTGGGAAGATGTGGAGATCAGTGTGTGTGTCAGAGGGCACCCAGCGCTAGAGAGCAGCCCTGGAGCCTTCACCAACCTGGGTGAAGCCTCCAGCCAGGATCTGAGGGGGGTCAGGAGGTGGCAGGAGTGCCCAGCCTGAAGTGCTGCCCCTAG
Seq C2 exon
GCAATCTCCAGGAAGTTCATGCCTCTGGACCAGTGGCTTTACTTTGATGCCCTCGATTGTCTTCCGGAAGATGGGGAGCTCCTTCCCAGTCCTGAGGACTGTGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182179-UBA7:NM_003335:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.262 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF052378=MoeZ_MoeB=PU(44.9=50.8)
A:
NA
C2:
PF052378=MoeZ_MoeB=FE(50.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGCAGAGACTGTGGTGG
R:
CGGAAGACAATCGAGGGCATC
Band lengths:
248-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)