GgaINT0022371 @ galGal4
Intron Retention
Gene
ENSGALG00000002521 | UBA7
Description
ubiquitin-like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]
Coordinates
chr12:2432260-2432681:-
Coord C1 exon
chr12:2432523-2432681
Coord A exon
chr12:2432368-2432522
Coord C2 exon
chr12:2432260-2432367
Length
155 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGGCGCCTCGCTCGCCCCAGGCC
3' ss Score
6.47
Exon sequences
Seq C1 exon
GAGGACGCTGAGCGTGTGCTGGAGCTGGCACGTGAGCTGGGCTCAGCGCTGGGCCCCCTGGATGAGGACGTCGTGCGGGCGTTCGCCAGCGTCAGCGCCGGGGAGCTGTGCCCGGTGGCGTCCTTCATGGGCGCGCTGGCTGCCCAGGAGGCGATGAAG
Seq A exon
GTGAGCGGGGACGTGGTGGGCTCTGCCGTCCCCAAGCGCTCGGTGGCCACGAGAGGGCACCTGCTGCCTTCTTGGGGACTCCGGGCGCTCGGAGCGGAGCGCCGGGTGGGCTGACGCGGTGCCAATGCTGGGCACGGGCGCCTCGCTCGCCCCAG
Seq C2 exon
GCCATCACGGGGAAGTTCCTGCCCCTGGAGCAGTGGTTTTACTTTGACGCCCTGGAGTGCCTGGCCGTGGAGGGGGCTGCGGGGCTGATGCCGGAGGACTGCGCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002521:ENSGALT00000003973:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF052378=MoeZ_MoeB=PU(52.5=58.5)
A:
NA
C2:
PF052378=MoeZ_MoeB=PD(44.1=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCTGGAGCTGGCAC
R:
CAGTCCTCCGGCATCAGC
Band lengths:
247-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]