GgaEX0003161 @ galGal4
Exon Skipping
Gene
ENSGALG00000002521 | UBA7
Description
ubiquitin-like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]
Coordinates
chr12:2432107-2432681:-
Coord C1 exon
chr12:2432523-2432681
Coord A exon
chr12:2432260-2432367
Coord C2 exon
chr12:2432107-2432187
Length
108 bp
Sequences
Splice sites
3' ss Seq
GGGCGCCTCGCTCGCCCCAGGCC
3' ss Score
6.47
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GAGGACGCTGAGCGTGTGCTGGAGCTGGCACGTGAGCTGGGCTCAGCGCTGGGCCCCCTGGATGAGGACGTCGTGCGGGCGTTCGCCAGCGTCAGCGCCGGGGAGCTGTGCCCGGTGGCGTCCTTCATGGGCGCGCTGGCTGCCCAGGAGGCGATGAAG
Seq A exon
GCCATCACGGGGAAGTTCCTGCCCCTGGAGCAGTGGTTTTACTTTGACGCCCTGGAGTGCCTGGCCGTGGAGGGGGCTGCGGGGCTGATGCCGGAGGACTGCGCCCCG
Seq C2 exon
AGGGGGTCCCGCTACGACGGGCAGATTGCCGTGTTCGGGGCCGACTTCCAGGAGGAGCTGGGCCGCCAGAAGTACTTCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002521_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.057 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF052378=MoeZ_MoeB=PU(52.5=58.5)
A:
PF052378=MoeZ_MoeB=PD(44.1=72.2)
C2:
PF0089916=ThiF=PU(4.1=22.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCTGGAGCTGGCAC
R:
CACGAAGTACTTCTGGCGGC
Band lengths:
227-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]