DreEX0082627 @ danRer10
Exon Skipping
Gene
ENSDARG00000037559 | uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
Coordinates
chr23:20727515-20728097:+
Coord C1 exon
chr23:20727515-20727691
Coord A exon
chr23:20727797-20727904
Coord C2 exon
chr23:20728017-20728097
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTATTGTTTATCTGCTCAGGCC
3' ss Score
6.91
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GCAGATGCGGATGAGCTTATGACTCTGGCTGAAGAGGTGAATGCTGCACAGACAGGATCTGCCAAGCAAGAGGAGCTGGACCAGGCAGTCATAAAAAAGCTGGCCTGCGTGGCTGCTGGAGACCTGGCACCCGTCAATGCCTTTATTGGTGGGCTTGCTGCCCAGGAGGTTATGAAG
Seq A exon
GCCTGCACAGGGAAGTTTATGCCCATCATGCAGTGGCTGTATTTTGATGCTTTGGAGTGCTTACCTGAGCCTGAGGAAGTCATTCTTACAGAGGAAGAGTGTGCTCCT
Seq C2 exon
AGGAACTGCCGGTATGACGGCCAGATTGCCGTCTTTGGGTCCAAGCTGCAGGAGCTGTTAGCCAAGCAGAGATATTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037559-'22-19,'22-18,23-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0089916=ThiF=PU(4.2=22.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATGCGGATGAGCTTATGA
R:
CTCTGCTTGGCTAACAGCTCC
Band lengths:
248-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]