BtaEX6006710 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90839627-90840202:+
Coord C1 exon
chrX:90839627-90839803
Coord A exon
chrX:90839930-90840034
Coord C2 exon
chrX:90840122-90840202
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTGTCCATTCTCCAGGCT
3' ss Score
8.31
5' ss Seq
CCGGTATGT
5' ss Score
9.2
Exon sequences
Seq C1 exon
GAGGATGCAGCAGAGCTGGTGACCATAGCCCAGGCTGTGAACGCTCGATCCCTGCCCGCAGTGCAGCAGGGCAGCCTGGATGAGGACCTCATCCGGAAGCTAGCATATGTGGCTGCTGGGGACCTGGCTCCCATAAATGCCTTCATTGGGGGCCTTGCTGCCCAGGAGGTCATGAAG
Seq A exon
GCTTGCTCTGGGAAGTTTATGCCCATCATGCAGTGGCTGTACTTTGATGCCCTTGAGTGTCTCCCTGAGGACAAAGAGGCCCTCACAGAGGACAAGTGCCTCCCG
Seq C2 exon
CGCCAGAACCGTTATGATGGGCAGGTAGCTGTATTTGGCTCAGACCTGCAGGAGAGGTTGGGCAAGCAGAAGTACTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764-'24-18,'24-17,25-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.057 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0089916=ThiF=PU(4.1=22.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAGCTGGTGACCATAGC
R:
GTACTTCTGCTTGCCCAACCT
Band lengths:
244-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]