RnoEX0095578 @ rn6
Exon Skipping
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1732985-1733529:-
Coord C1 exon
chrX:1733353-1733529
Coord A exon
chrX:1733152-1733256
Coord C2 exon
chrX:1732985-1733065
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTTTCCTTCTCCTTCACTAGGCC
3' ss Score
11.25
5' ss Seq
CCAGTATGT
5' ss Score
5.8
Exon sequences
Seq C1 exon
GAAGATGCAACAGAACTGGTGACCCTAGCTCAGGCTGTGAATGCTCGGTCCCCACCTGCAGTACAACAGGACAACGTGGATGAAGACCTTATTCGGAAGCTAGCTTATGTTGCTGCTGGGGACCTGGCACCTATAAATGCTTTCATTGGGGGCCTCGCTGCCCAGGAAGTCATGAAG
Seq A exon
GCCTGTTCTGGAAAGTTTATGCCCATCATGCAGTGGTTGTACTTTGATGCTCTTGAATGTCTCCCAGAGGACAAAGAGGCTCTGACAGAGGACAAGTGCCTCCCA
Seq C2 exon
CGTCAGAACCGTTATGATGGGCAGGTAGCTGTATTTGGCTCAGACCTTCAAGAGAAGCTGGGCAAGCAAAAGTACTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164-'25-16,'25-15,26-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.153 A=0.057 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0089916=ThiF=PU(4.1=22.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGGTGACCCTAGCTCAGG
R:
AGGAAGTACTTTTGCTTGCCCA
Band lengths:
244-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]