RnoEX0095620 @ rn6
Exon Skipping
Gene
ENSRNOG00000029195 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:RGD Symbol;Acc:1308323]
Coordinates
chr8:116756483-116757162:+
Coord C1 exon
chr8:116756483-116756653
Coord A exon
chr8:116756907-116756947
Coord C2 exon
chr8:116757082-116757162
Length
41 bp
Sequences
Splice sites
3' ss Seq
TGCCCTTGAATGTCTTCCAGAAG
3' ss Score
7.72
5' ss Seq
CCAGTGAGA
5' ss Score
3.73
Exon sequences
Seq C1 exon
GATGACGCAGAGACCGTGGTGTGGCTGGCCCAGGACCTAGAGCCACTAAAAGGGGCAAAAGAAGAGTCGCTGGATGAGGCTCTACTCCGGACAATTGCCCTGAGTAGTGCTGGTAGCTTAAGTCCCATGGCAGCCATTCTGGGAGGAGTGGCTGCCCAGGAAGTCCTGAAG
Seq A exon
AAGATGAGACGCTCCTGCCCAGTCCTGAGGACTGTCATCCA
Seq C2 exon
AGAAACTGCCGATACGACGGGCAAATTGCTGTGTTCGGGACTGGTTTTCAGGAGAAACTGAGCTACAAACACTACCTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029195-'10-16,'10-15,11-16
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.139 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0089916=ThiF=PU(4.1=22.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTGGATGAGGCTCTACTC
R:
ACAGCAATTTGCCCGTCGTAT
Band lengths:
137-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]