HsaEX0068638 @ hg19
Exon Skipping
Gene
ENSG00000182179 | UBA7
Description
ubiquitin-like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:12471]
Coordinates
chr3:49847696-49848888:-
Coord C1 exon
chr3:49848706-49848888
Coord A exon
chr3:49848417-49848524
Coord C2 exon
chr3:49847696-49847861
Length
108 bp
Sequences
Splice sites
3' ss Seq
GCCTGAAGTGCTGCCCCTAGGCA
3' ss Score
4.47
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GTTGATGCAGAGACTGTGGTGGGCCTGGCCCGGGACCTGGAACCACTGAAGCGGACAGAGGAAGAGCCACTGGAAGAGCCACTGGATGAGGCCCTAGTGCGGACAGTCGCCCTAAGCAGTGCAGGTGTCTTGAGCCCTATGGTGGCCATGCTGGGTGCAGTAGCTGCCCAGGAAGTGCTGAAG
Seq A exon
GCAATCTCCAGGAAGTTCATGCCTCTGGACCAGTGGCTTTACTTTGATGCCCTCGATTGTCTTCCGGAAGATGGGGAGCTCCTTCCCAGTCCTGAGGACTGTGCCCTG
Seq C2 exon
AGACCCAAGGCAGAGGTGGCTGCAGCAGCTGCCCGGGGCCTGAACCCAGACTTACAGGTGATCCCGCTCACCTACCCACTGGATCCCACCACAGAGCACATCTATGGGGATAACTTTTTCTCCCGTGTGGATGGTGTGGCTGCTGCCCTGGACAGTTTCCAGGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182179_MULTIEX2-1/6=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.262 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
PF052378=MoeZ_MoeB=PU(44.9=50.8)
A:
PF052378=MoeZ_MoeB=FE(50.7=100)
C2:
PF0089916=ThiF=FE(38.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCACTGAAGCGGACAGAG
R:
AGATGTGCTCTGTGGTGGGAT
Band lengths:
247-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)