DreINT0170294 @ danRer10
Intron Retention
Gene
ENSDARG00000037559 | uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
Coordinates
chr23:20727515-20727904:+
Coord C1 exon
chr23:20727515-20727691
Coord A exon
chr23:20727692-20727796
Coord C2 exon
chr23:20727797-20727904
Length
105 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
TTTATTGTTTATCTGCTCAGGCC
3' ss Score
6.91
Exon sequences
Seq C1 exon
GCAGATGCGGATGAGCTTATGACTCTGGCTGAAGAGGTGAATGCTGCACAGACAGGATCTGCCAAGCAAGAGGAGCTGGACCAGGCAGTCATAAAAAAGCTGGCCTGCGTGGCTGCTGGAGACCTGGCACCCGTCAATGCCTTTATTGGTGGGCTTGCTGCCCAGGAGGTTATGAAG
Seq A exon
GTAATATGGTCTTCCATTATTGTCTTTGAACTTTAGATCTGTGAGATGCAGCATTGTGATGTGTTAGCCTCACCTATCATGCTTCTTTATTGTTTATCTGCTCAG
Seq C2 exon
GCCTGCACAGGGAAGTTTATGCCCATCATGCAGTGGCTGTATTTTGATGCTTTGGAGTGCTTACCTGAGCCTGAGGAAGTCATTCTTACAGAGGAAGAGTGTGCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037559:ENSDART00000054691:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGAATGCTGCACAGACAG
R:
AGGAGCACACTCTTCCTCTGT
Band lengths:
251-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]