BtaINT0155878 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90839627-90840034:+
Coord C1 exon
chrX:90839627-90839803
Coord A exon
chrX:90839804-90839929
Coord C2 exon
chrX:90839930-90840034
Length
126 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
CTCTCCTGTCCATTCTCCAGGCT
3' ss Score
8.31
Exon sequences
Seq C1 exon
GAGGATGCAGCAGAGCTGGTGACCATAGCCCAGGCTGTGAACGCTCGATCCCTGCCCGCAGTGCAGCAGGGCAGCCTGGATGAGGACCTCATCCGGAAGCTAGCATATGTGGCTGCTGGGGACCTGGCTCCCATAAATGCCTTCATTGGGGGCCTTGCTGCCCAGGAGGTCATGAAG
Seq A exon
GTCAGCGTAGGTGGAAAAGGGCAGGGTTGGGGTAGGCCAGGCGCCTACCTGCCTCTATCACTTGTCCCATCTGCATGAGGCCCCAGGTAAGCACTGACTACTTCCCCTCTCCTGTCCATTCTCCAG
Seq C2 exon
GCTTGCTCTGGGAAGTTTATGCCCATCATGCAGTGGCTGTACTTTGATGCCCTTGAGTGTCTCCCTGAGGACAAAGAGGCCCTCACAGAGGACAAGTGCCTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764:ENSBTAT00000022299:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.057
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAGCTGGTGACCATAGC
R:
GCCTCTTTGTCCTCAGGGAGA
Band lengths:
249-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]