RnoINT0158920 @ rn6
Intron Retention
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1733152-1733529:-
Coord C1 exon
chrX:1733353-1733529
Coord A exon
chrX:1733257-1733352
Coord C2 exon
chrX:1733152-1733256
Length
96 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CTTTCCTTCTCCTTCACTAGGCC
3' ss Score
11.25
Exon sequences
Seq C1 exon
GAAGATGCAACAGAACTGGTGACCCTAGCTCAGGCTGTGAATGCTCGGTCCCCACCTGCAGTACAACAGGACAACGTGGATGAAGACCTTATTCGGAAGCTAGCTTATGTTGCTGCTGGGGACCTGGCACCTATAAATGCTTTCATTGGGGGCCTCGCTGCCCAGGAAGTCATGAAG
Seq A exon
GTAAGTGGGGTTTTGTCTTGCCTTTATTACTTGCTATCCAAATGTGTAAGGGCCTGATTAACACTGGCCACTTCCTCTTTCCTTCTCCTTCACTAG
Seq C2 exon
GCCTGTTCTGGAAAGTTTATGCCCATCATGCAGTGGTTGTACTTTGATGCTCTTGAATGTCTCCCAGAGGACAAAGAGGCTCTGACAGAGGACAAGTGCCTCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164:ENSRNOT00000031115:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.153 A=NA C2=0.057
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCTTATGTTGCTGCTGGGG
R:
GCACTTGTCCTCTGTCAGAGC
Band lengths:
176-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]