HsaINT0175995 @ hg19
Intron Retention
Gene
ENSG00000130985 | UBA1
Description
ubiquitin-like modifier activating enzyme 1 [Source:HGNC Symbol;Acc:12469]
Coordinates
chrX:47062037-47062446:+
Coord C1 exon
chrX:47062037-47062213
Coord A exon
chrX:47062214-47062341
Coord C2 exon
chrX:47062342-47062446
Length
128 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
CTCTCCCTTCCCCTCTCCAGGCC
3' ss Score
11.56
Exon sequences
Seq C1 exon
GAGGATGCAGCAGAACTGGTAGCCTTAGCACAGGCTGTGAATGCTCGAGCCCTGCCAGCAGTGCAGCAAAATAACCTGGACGAGGACCTCATCCGGAAGCTGGCATATGTGGCTGCTGGGGATCTGGCACCCATAAACGCCTTCATTGGGGGCCTGGCTGCCCAGGAAGTCATGAAG
Seq A exon
GTCAGCACGGGTGGGGAGAGGCAGGATTGGGGTGGGCCAGGTTCCTCCATGACTCTGTCACTTGCTCTCTGTCTGTGTCAGGCCCCTGTTAACCACTGACCACCCCCTCTCTCCCTTCCCCTCTCCAG
Seq C2 exon
GCCTGCTCCGGGAAGTTCATGCCCATCATGCAGTGGCTATACTTTGATGCCCTTGAGTGTCTCCCTGAGGACAAAGAGGTCCTCACAGAGGACAAGTGCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130985-UBA1:NM_003334:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGAATGCTCGAGCCCTG
R:
GAGGCACTTGTCCTCTGTGAG
Band lengths:
245-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)