HsaINT0181357 @ hg19
Intron Retention
Gene
ENSG00000110799 | VWF
Description
von Willebrand factor [Source:HGNC Symbol;Acc:12726]
Coordinates
chr12:6120783-6121296:-
Coord C1 exon
chr12:6121253-6121296
Coord A exon
chr12:6120961-6121252
Coord C2 exon
chr12:6120783-6120960
Length
292 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TCTGCTGTTTTCTTCTGCAGCCC
3' ss Score
11.4
Exon sequences
Seq C1 exon
GATTTGTTAGGATTTGCATGGATGAGGATGGGAATGAGAAGAGG
Seq A exon
GTAAGTTCCTTTCTGTTGACTTTGAAAGAAAGGTTAGAGATGTGTTTGGGGCTCTTGTTCCCACTGGTTAATTTTTCCTCCTTTGGTCTTAGTCCAGTGCTTCCTTTTACTATTATCTTGTTTTTGCGGGTCCATCTGTACATCTTGTGTTTTGCTTCCTGTCTCATGTACAGGGGGCCTCCTTGCTGTGTAGGCCTGTGTTCAATTCTAGGGGTCAGTTGTCTGGCAGATGGGCTTAGAGTTGGAGTACCTCATCTTATTCCCTGCCTGAATCTGCTGTTTTCTTCTGCAG
Seq C2 exon
CCCGGGGACGTCTGGACCTTGCCAGACCAGTGCCACACCGTGACTTGCCAGCCAGATGGCCAGACCTTGCTGAAGAGTCATCGGGTCAACTGTGACCGGGGGCTGAGGCCTTCGTGCCCTAACAGCCAGTCCCCTGTTAAAGTGGAAGAGACCTGTGGCTGCCGCTGGACCTGCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110799-VWF:NM_000552:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGTTAGGATTTGCATGGATGAGG
R:
CAGCCACAGGTCTCTTCCACT
Band lengths:
204-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)