MmuINT0174505 @ mm10
Intron Retention
Gene
ENSMUSG00000001930 | Vwf
Description
Von Willebrand factor [Source:MGI Symbol;Acc:MGI:98941]
Coordinates
chr6:125648782-125649294:+
Coord C1 exon
chr6:125648782-125648825
Coord A exon
chr6:125648826-125649116
Coord C2 exon
chr6:125649117-125649294
Length
291 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TCTGTTTTCTCTGTATATAGCCT
3' ss Score
7.81
Exon sequences
Seq C1 exon
GGTTTTCTGGAGTTTGTGTGGATGAAGATGGGAATGAGAAGAGG
Seq A exon
GTGAGTCCCTTCCTGCTGACTTGGGAGGAAAGGTCAGAAATATACGTTGGGGCTCTTGTTCTATGGACTAATCACTCTGCTTGGTCTTAGACTCATTCTCCTGCATGTTTGCCTATTTTTTTTTTTTTGGAGGGGGAAGTCCCTCTGTAAATTTTAGGTTTCTTGTCTCGTGCCAAAAGGCTGCTGTCCAGCCCTAACCCATCCCGCGAGGCAGGCAGTGACATGTGGGTGGACTTCGATCTGGTGTGCCTTACCCTGGTCCTTTCTCAAATCTGTTTTCTCTGTATATAG
Seq C2 exon
CCTGGGGATGTCTGGACCTTGCCGGATCAGTGCCACACAGTGACTTGCTTGGCAAATGGCCAGACCTTGCTGCAGAGTCATCGTGTCAATTGTGACCATGGACCCCGGCCTTCATGTGCCAACAGCCAGTCTCCTGTTCGGGTGGAGGAGACGTGTGGCTGCCGCTGGACCTGCCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001930:ENSMUST00000112254:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTTCTGGAGTTTGTGTGGA
R:
CAGCCACACGTCTCCTCCA
Band lengths:
205-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types