RnoINT0164164 @ rn6
Intron Retention
Gene
ENSRNOG00000019689 | Vwf
Description
von Willebrand factor [Source:RGD Symbol;Acc:621759]
Coordinates
chr4:158182147-158182657:+
Coord C1 exon
chr4:158182147-158182190
Coord A exon
chr4:158182191-158182479
Coord C2 exon
chr4:158182480-158182657
Length
289 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TCTGTTTTCTCCTTCTGTAGCCT
3' ss Score
9.37
Exon sequences
Seq C1 exon
GGTTTTCTGGAGTTTGTGTGGATGAGGATGGGAACGAGAAGAGG
Seq A exon
GTAAGTCCCTTCCTGATGACTCGGATGGAAAGGTTAGAAATATGTGTTGGGGCTCTTGTTCTATTGGCTAACTACTCTGGCTGGTTAGTTNCTTGGACTCATTCTCCTGCATGTTATTAACCTGTTTTGGGGGGGGGTCCCTCTGTAAATCTTGTGTTATGTTTCTTGGCTTATGTAGAGCCTCCTTGCCGAAAGGAGAGGCTGAGAGGCGGGCAGTGACATGTAGGTGGACTTCGATTTGGTGTGCCTCATCCTGGTCCTTTCTCAAATCTGTTTTCTCCTTCTGTAG
Seq C2 exon
CCTGGAGACGTCTGGACCTTGCCAGATCAGTGCCACACAGTGACTTGCTTGGCAAATGGTCAGACCTTGTTGCAGAGTCATCGGGTCAATTGTGACCATGGACCCCGGCCTTCATGTTCCAACAGCCAGTCTCCCGTTCGGGTGGAGGAGACCTGTGGCTGCCGCTGGACCTGCCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019689:ENSRNOT00000026643:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTTCTGGAGTTTGTGTGGA
R:
AGCCACAGGTCTCCTCCAC
Band lengths:
204-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]