GgaINT0111239 @ galGal3
Intron Retention
Gene
ENSGALG00000017272 | VWF
Description
NA
Coordinates
chr1:76612093-76615958:-
Coord C1 exon
chr1:76615915-76615958
Coord A exon
chr1:76612271-76615914
Coord C2 exon
chr1:76612093-76612270
Length
3644 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
ATTCATGTCTCTTTATCTAGCCT
3' ss Score
5.7
Exon sequences
Seq C1 exon
ATCCTGTCAGAGAATGTATAGATGAGGATGGAAACAAGAAGAAA
Seq A exon
GTAAGTTTACTGCTTGTGACATCCACATGGTTTTCAAGTTATAAAGTTCATGCAGGACGATAAATACCTGAATAGGTATTCTGAAACAAGAAGCGTTGTCTAATTGTAAGGTTTTCTTTCTGAGAGTGATTTTTGAGGAATAAAAATGGTAAAAACTTCTAGGAAAGCTATATGTGACCAAGAAGTATGTGTATAGGGAAAGGTGACATTACTGTCCGGACCTCTAGAAAGCGCAAGTACCTCCTCCCTATGGAAATTTAATCCGAAGATAATTATTATGTCATTTATTTTTTTTCCTAGGAAAATTTATGCCTTCTTAAGTCATGGAATTGAAATCAGAATTCTTAACATTTGTTTGCATAAAATCTTCTATTAATCCTGAGAAAATTATCAGAAATCTTAGCAAAATTGCCTGCTCTCTTGAAAGCGATCCTCTGTAGGGAATGATGTAATTATTACAAATGATTCAGATCTTTCTATCTCAGGTGAGATACCAAAGTAATTGAGTCTCCATGATGCTTCAGACATTTTAGAATGTAAGCATAAGCTTGTTACAACTTTGTATATTTTAGTAATGGTCAGTTATGAGTTCTGCTCTGTGATTTATTTTGAATTTTCATTATGTTAAAAGTATCTTGATTTCCCCCCCCCCCCCCTTAAATTACTGTAAGGAAGGATGTTGCTAATAAATGCTTTTGAACTATCTAGACACAGGAAATATGTTGGTTGCTCCAATAGCAATGCCTCCTATTTATTTCCATGGAAACTACAACAGATACAAAGAGAACAATTATACTATATGATAGAATAAATTCTTAGCCACAGAGTGCTATTTCTCAATGCAATCACCACCATTAGCTATGCATTTTCACCAGCAATTAACAGAAGCCTGCATGTTGTGCTTATAAAAATCCACACTGGTAGAGGTACTGTCACCTCTGCAAAAACATGTCACCCATCACCTCACTGAACTAACATCCACTGTTGGATCTCCATAAAATGTTCAGCAAGTGTTGATGAATGTCAGTAGGTGCAATTTTTACCACATGGAGGAATTCAGTTACATACCTTTGCATCATATACTTAATATGCCAGAGGCTATTTGTCAGTCTATCTGCTGCCATTTGTCACGCAGCAACAGAATTTAATGGAATATTGTCATAAAGATTCAGCCTGTACTGCCATACCACTGACATCTGCCTCTGATACCATGGGCCAGCATAATAAAATAGGAGGTATTACTTTGAATCTATTTAAATTTTTTGTATTCGTGCCCTGTGGTAAGTTCAAATAGCTCTAAATACAAACTGTGTAGAGAGCCACTGTTTCAATATGATTTGAACTTGCTGCATGACAGAATATGAGAATGATTATGAATTTTTAAAATGTAGTTTATTCTTTTTGGTACTCTTCCTCTGATGCTTTTAAACAGGATTGCAACTGGCAACTGAAGTGTTAATATTTGTATTATAGTAGTAGTTAGTTAGTAGTTAATAGTCATTATGAAGAATCTGTTTAGCTATCTTCTGATGGGTTAGAGGTTAAGACTAGATGGTTCCAGTGGTCTTTCCAAGCATAATGATTCTGATTCTACAATTTCTAGCAATAGTAATCACATTCCTAAACTAGTGGTTGCCATAACAAAACTTTTCTAGTATTGCTCAGTATTTAGTTTAGAGAAGAACAACTAACCAGTGAAAACCTTGACTTAATTAAAAGTTGGCAAATGATAAATCCAGTCCAGGCACATGACTGTTTTCTGTGGATCTGCAGTAATAGAAAGAGTGTGCGCATATAGGTCCACATGTTCAGAGCTCCCTCAGAGAGGAAGTCTGAGTCTTTCTCTGCCCATCTGTTTCAGCAGATTTATACTTACCTATTCAGGTTTTGCTTTCCATTCTATTCTACTTCTTGATTTCATATTGGTTGGGATTTAGGATCTTTTTCTCTTCCGAGTCCCTGAGTTTTCATCTGCACTAGAACTCTTGATTTTGTTTGGATCCCTCAATTGATATTTTCATTTTAATGTGATGTGCTTTGCTGGACAACAAGTCCAGCTCTTAGATATTTTCCAGTTGATATTCTATAAAGGATTGAAAGAAGAAAGAAATTAAATATGTACGGAAGCCAGAGAATCCGTTGCCATACTTGCACAGCTGTATATGTAACCTTCCAGATGCCCAACTTTCACTGAGTTGTAGGCAAGGCCATTATAATTAATAATAATAATAATAATAATAATTTCTTTCTATATAAATATTTTTTCCATACTTAAAGTTCCTCACATTTATTTTTCACAGCATCCTCTAGGCTCACAAGCCTGAAAAGTATTAAGTCACTTTCAGGCCAACTTCCCTTCCTAAATCCTGAAACGTAAGAAGTATGCACAGTCATTTAAGTCATATTTAATGTGTAATAGATCGAAGGTACAGAGCATGACTTTTATGTCACTGTTATTGGTCTGCACAACACTAAAGAATTGATTGTCTGCAAAGTAGTGAAGAACATATCAATCATGGTTTATCTACCTAGATATTGCATCACTTTGTTCTTCTCTTTCATGAGAATGGGAAATAAGCTCAAGAGGAGAGAATGATTGATAACTTAATTATTTAGCAATCTTCTTTACTTCCAGACATATTTCTGCTTGTGTTTATCAAGACATGCACAGAGCCATTGTCTCACTTTTTACTAGTACTTCTGAACTCACCTCTGTAGAGATGGGTACATCTGGAAAGGGCTGTTTCCCACATTTGACAGTGCTTTTGGGAGTGCAAACCACAAGCATGAACAATCTAATTTAAAATTCATTGAGTTTGTTTACGGGCTTTTGAGGCCTGTGAGACCTCAGCCTTTTGCACATATGAATCTTGAGCTAGTCCAGGTTGTGACCAGATCTATTTCTCTGTCATTTAGTAGTAAGTAATCCAGCTGCCTTAAAATTTACACTATTCTAGAAGACAGTCTTCTGAAGAAGATGAGGATGCGTTTTAATTGTTTTTAATTTTATAGGAATGCTATATGTATCTAATAGCATTAGTCTAGTAAATAAACAGTTTCCCTATGGGAAAGAATTTCTTTAAAGTTTGGGAGCTGTGGATAAAATCACTAGAATATTCCATGCCTCCATAACTTGCACTAAGTACTGTTAATTATTGCTGTGCCATGAGCACCTGTGCTCAGAACTCTTTCTAAAGTAATTTTGAAACCTATGAAAACTAGAGACATTGGCATTTAAACAAGTGACAAGAGAAATTATTTATTGACTATGTTATCCATGCATGCTATAGGATGGTTAAATTAAAAGTAGATGTAGTACCAGCTAATTCATTCTGTTGTGGCAAAACACCTCCTATTCTAGACTATTATCTTTTGCTTGGAATTTCAAAAGTCTATTTCCTGCAGAGGTGCTACATTTAACTTTCTCTTGCTCATAAAGTCCTTAATACACTGCATTCTACTATTTAGTTATTCAAAGCTAATCTGAGTAGCACTACTATTGGTGTTATTTTATGTGCTAGCTGGAGATTATAGATTGGGGTGGAATGGTAGAAGGCAAGTTTTGCATTTCTCTCCCTTCAATCTCCCTCAAGCCTTCAGTGATGTTCTTTTAAGTAGTTAAATATTCATGTCTCTTTATCTAG
Seq C2 exon
CCTGGTGACAAATGGACATTACCAGATCAATGCCACACTGTGACGTGCTTTCCAGGTGATTACACAGTCTTGGAGAGTCACCAAATTAACTGTGAGAGGATGCCAAAACCTGTGTGTCACAGCAATCTTCCTGCTGTTAAGGTTGAAGAGACTTGTGGCTGCCGATGGATGTGTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017272:ENSGALT00000037259:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]