HsaINT0183579 @ hg19
Intron Retention
Gene
ENSG00000168334 | XIRP1
Description
xin actin-binding repeat containing 1 [Source:HGNC Symbol;Acc:14301]
Coordinates
chr3:39224706-39231016:-
Coord C1 exon
chr3:39227580-39231016
Coord A exon
chr3:39227153-39227579
Coord C2 exon
chr3:39224706-39227152
Length
427 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
TCCTCCTCCTACTCTCCCAGCTG
3' ss Score
8.14
Exon sequences
Seq C1 exon
CATCCAGCCTCTACCCTGCTGAACATCTAGATCTAAGGCTCCCAATCCCATCCTCATCTCTGCCCCTTCTTCTCAGAAGGATGGCCGACACCCAGACACAGGTGGCCCCCACACCAACCATGAGGATGGCAACTGCAGAGGACCTGCCCCTCCCTCCACCCCCAGCCCTGGAGGACCTGCCACTGCCGCCACCCAAGGAATCCTTCTCCAAGTTCCATCAGCAGCGGCAAGCTAGTGAGCTCCGCCGCCTCTACAGGCACATCCACCCTGAGCTCCGCAAGAATCTGGCTGAGGCTGTGGCCGAGGATCTGGCTGAGGTCCTGGGCTCTGAGGAACCCACCGAGGGTGACGTTCAGTGCATGCGCTGGATCTTTGAGAACTGGAGACTGGATGCCATTGGAGAACACGAGAGGCCAGCTGCCAAGGAGCCCGTGCTGTGTGGTGACGTCCAGGCCACCTCCCGCAAGTTTGAGGAAGGCTCCTTTGCCAACAGCACAGACCAGGAGCCAACCAGGCCCCAGCCAGGTGGAGGAGACGTTCGTGCAGCCCGCTGGCTATTTGAGACAAAGCCACTGGACGAGCTGACAGGGCAAGCCAAGGAACTGGAGGCCACTGTGAGGGAGCCTGCAGCCAGCGGAGATGTGCAGGGTACCAGGATGCTCTTTGAGACGCGGCCGCTGGACCGCCTGGGCTCCCGCCCCTCCCTGCAGGAGCAGAGCCCCTTGGAACTGCGCTCAGAGATCCAGGAGCTGAAGGGTGATGTGAAAAAGACAGTGAAGCTCTTCCAAACGGAGCCCCTGTGTGCCATCCAGGATGCAGAGGGCGCCATCCATGAGGTCAAGGCCGCATGCCGGGAGGAGATCCAAAGCAACGCGGTGAGGTCTGCCCGCTGGCTCTTTGAGACCCGGCCTCTGGACGCCATCAACCAGGACCCCAGCCAGGTGCGGGTGATCCGGGGGATTTCCCTGGAGGAGGGGGCCCGGCCCGACGTCAGTGCAACTCGCTGGATCTTTGAGACACAGCCCCTGGATGCCATCCGGGAGATCTTGGTAGATGAGAAGGACTTCCAGCCATCCCCAGACCTTATCCCACCTGGTCCAGATGTTCAGCAGCAGCAGCATCTGTTTGAGACCCGAGCGCTGGACACTCTGAAGGGGGACGAAGAGGCTGGAGCAGAGGCCCCACCCAAGGAGGAAGTGGTCCCTGGTGATGTCCGCTCCACCCTGTGGCTATTTGAAACAAAGCCCCTGGATGCTTTCAGAGACAAGGTCCAAGTGGGTCACCTACAGCGAGTGGATCCCCAGGACGGTGAGGGGCATCTATCCAGTGACAGCTCCTCAGCACTGCCCTTCTCTCAGAGTGCCCCCCAGAGGGATGAGCTAAAGGGGGATGTGAAGACTTTTAAGAACCTTTTTGAGACCCTTCCCTTGGACAGCATTGGACAGGGTGAGGTTCTGGCCCATGGGAGTCCAAGCAGAGAAGAAGGAACTGATTCTGCTGGGCAGGCCCAGGGCATAGGGTCCCCAGTGTATGCCATGCAGGACAGCAAGGGCCGCCTCCATGCCCTGACCTCTGTTAGCAGAGAGCAGATAGTCGGAGGTGATGTGCAGGGCTACAGGTGGATGTTTGAGACACAGCCCCTAGACCAGCTCGGCCGAAGCCCCAGTACCATCGACGTGGTGCGGGGCATCACCCGGCAGGAAGTGGTGGCTGGGGACGTTGGCACAGCTCGGTGGCTTTTTGAGACCCAGCCCCTGGAGATGATCCACCAACGGGAGCAGCAGGAACGACAGAAAGAAGAAGGGAAGAGTCAGGGAGACCCCCAGCCTGAGGCACCCCCAAAGGGCGATGTGCAGACCATCCGGTGGTTGTTCGAGACTTGCCCAATGAGTGAGTTGGCCGAAAAGCAGGGGTCAGAGGTCACAGATCCCACAGCCAAGGCTGAGGCACAGTCCTGCACCTGGATGTTCAAGCCCCAACCTGTGGACAGGCCAGTGGGCTCCAGGGAGCAGCACCTGCAGGTTAGCCAGGTCCCGGCTGGGGAAAGACAGACAGACAGACACGTCTTTGAGACCGAGCCTCTTCAGGCCTCAGGCCGTCCCTGTGGAAGACGGCCTGTGAGATACTGCAGCCGCGTGGAGATCCCTTCAGGGCAGGTGTCTCGTCAGAAAGAGGTTTTTCAGGCCCTGGAGGCAGGCAAGAAGGAAGAACAGGAGCCCCGGGTAATCGCTGGGTCCATCCCCGCGGGTTCTGTCCACAAGTTCACTTGGCTTTTTGAGAATTGTCCCATGGGCTCCCTGGCAGCTGAGAGCATCCAAGGGGGCAACCTCCTGGAAGAGCAGCCCATGAGCCCCTCAGGCAACAGGATGCAAGAGAGCCAGGAGACTGCAGCTGAGGGGACCCTGCGGACTCTGCATGCCACACCTGGCATCCTGCACCATGGAGGCATCCTCATGGAGGCCCGAGGGCCAGGGGAGCTCTGTCTTGCCAAGTATGTGCTCTCGGGCACAGGGCAGGGGCACCCTTATATACGAAAGGAGGAGCTGGTGTCAGGTGAACTTCCCAGGATCATCTGCCAAGTCCTGCGCCGGCCAGATGTGGACCAGCAGGGGCTGCTGGTGCAGGAAGACCCAACTGGCCAGCTCCAACTCAAGCCGCTGAGGCTGCCAACTCCAGGCAGCAGTGGGAATATTGAAGACATGGACCCTGAGCTCCAGCAGCTGCTGGCTTGCGGTCTTGGGACCTCCGTGGCAAGGACTGGGCTGGTGATGCAGGAGACAGAGCAGGGCCTGGTCGCACTGACTGCCTACTCTCTGCAGCCCCGGCTAACTAGCAAGGCCTCTGAGAGGAGCAGCGTGCAGCTGTTGGCCAGCTGCATAGATAAAGGAGACCTGAGTGGCCTGCACAGTCTGCGGTGGGAGCCCCCGGCTGACCCGAGTCCAGTGCCAGCCAGCGAGGGGGCCCAGAGCCTGCACCCAACTGAGAGCATCATCCATGTTCCCCCACTGGACCCCAGCATGGGGATGGGGCATCTGAGAGCCTCAGGGGCCACCCCTTGCCCTCCTCAGGCCATTGGAAAGGCAGTCCCTCTGGCTGGGGAAGCTGCAGCACCAGCCCAATTGCAAAACACAGAAAAGCAGGAAGACAGTCACTCTGGACAGAAAGGGATGGCAGTCTTGGGAAAGTCAGAAGGAGCCACGACTACCCCTCCGGGGCCTGGGGCCCCAGACCTCCTGGCCGCCATGCAGAGTCTGCGGATGGCAACAGCTGAAGCCCAGAGCCTGCACCAGCAAGTTCTGAACAAGCACAAGCAGGGCCCCACCCCAACAGCCACTTCCAACCCCATCCAGGACGGTCTTCGGAAAGCTGGGGCTACCCAAAGCAACATAAGGCCTGGGGGTGGAAGTGATCCCCGGATCCCAGCAGCCCCCAGAAAG
Seq A exon
GTCAGTAGGGAAGAGCAAGCACTACCCAGAGGGCTGCCTGGGGGGTGGGTGACAATTCAGGATGGCATCTACACCGCTCATCCCGTGAGGACCTTTGACCCACCTGGGGGTGTCCAGCTTTCTCAGAGGGAACCCCAGTCAAGGCACAGGGAGACTGCCCTCTCAGTCCAGGCTCCCCGCCCACTCCAGGGAGGCCCAGGTCAGAGTACTGGGCCAGGGCGGGAGGAGCCTGGGGGCTGCACACAGATGGCCTGGGGGCCACCAGGGAAGGCGATGGCAGAAGTCTGCCCAGGGGGCCTCCAAGCTGCAGAGACCACCCTGAAGACTGCCCCTCTAGGCCGCCACATTCTGGCCTCTGGGCCCCAAGCTGCAGGTGCCAGCCCGCACCCCCATAATGCCTTTGTTCCTCCTCCTCCTACTCTCCCAG
Seq C2 exon
CTGCTGTGACAGGACCTGACTTTCCAGCTGGAGCCCACCGTGCTGAGGACTCCATCCAGCAAGCCTCTGAGCCCCTGAAGGACCCCCTTCTTCACTCCCACAGCAGCCCTGCTGGCCAGAGAACCCCTGGAGGGTCACAGACAAAGACCCCAAAACTGGACCCCACCATGCCCCCAAAGAAGAAGCCGCAGCTGCCCCCTAAACCTGCACACCTAACCCAGAGCCACCCTCCTCAGAGGCTGCCCAAGCCCTTGCCTCTATCTCCCAGCTTTTCCTCGGAGGTGGGGCAAAGAGAACACCAACGAGGTGAGAGAGATACAGCCATCCCTCAGCCAGCCAAGGTTCCCACTACTGTAGACCAGGGCCACATACCTCTGGCCAGATGTCCCAGTGGACATAGCCAGCCCAGCTTACAACATGGCCTCAGCACCACGGCCCCCAGGCCCACCAAGAATCAGGCTACAGGCAGCAATGCCCAGAGCTCTGAGCCCCCCAAGCTCAATGCCCTCAACCATGATCCCACCTCACCACAGTGGGGCCCCGGCCCCTCAGGAGAGCAGCCCATGGAAGGTTCCCACCAAGGGGCCCCTGAGAGCCCTGACAGTCTGCAAAGAAACCAGAAAGAGCTCCAGGGCCTCCTGAACCAGGTGCAAGCCCTGGAGAAGGAGGCCGCAAGCAGTGTGGACGTGCAGGCCCTGCGGAGGCTCTTTGAGGCCGTGCCCCAGCTGGGAGGGGCTGCTCCTCAGGCTCCTGCTGCCCACCAAAAGCCCGAGGCCTCAGTGGAGCAGGCCTTTGGGGAGCTGACACGGGTCAGCACGGAAGTTGCTCAACTGAAGGAACAGACCTTGGCAAGGCTGCTGGACATTGAAGAGGCTGTGCACAAGGCACTCAGCTCCATGTCTAGCCTCCAGCCTGAGGCCAGTGCCAGAGGCCATTTCCAGGGACCTCCAAAAGACCACAGTGCCCACAAGATCAGTGTCACAGTCAGCAGTAGCGCCAGGCCCAGTGGCTCAGGCCAGGAGGTCGGAGGTCAAACTGCAGTCAAGAACCAAGCCAAGGTTGAATGCCACACTGAGGCCCAGAGTCAAGTCAAGATCAGAAATCACACAGAGGCCAGAGGTCACACAGCCTCAACTGCCCCTTCCACCAGGAGGCAGGAGACATCAAGAGAGTATTTGTGCCCTCCTCGGGTTTTACCTTCCAGCCGAGATTCTCCCTCCTCCCCAACATTTATCTCCATCCAGTCGGCCACAAGGAAGCCTCTAGAGACTCCCAGCTTTAAGGGCAACCCTGATGTCTCAGTGAAAAGCACACAACTGGCTCAGGACATAGGCCAGGCCCTGCTCCACCAGAAAGGTGTCCAAGACAAAACTGGGAAGAAGGACATCACCCAGTGCTCTGTGCAACCTGAACCTGCCCCTCCCTCAGCCAGTCCCCTGCCCAGAGGGTGGCAAAAGAGTGTTCTGGAGCTACAGACGGGGCCAGGGAGCTCACAACACTATGGAGCCATGAGAACCGTGACTGAACAGTATGAGGAGGTGGACCAGTTTGGGAACACAGTCCTCATGTCTTCCACCACAGTCACCGAGCAGGCAGAGCCACCCAGGAACCCAGGCTCCCACCTCGGGCTCCACGCCTCCCCCTTGCTGAGGCAGTTCCTGCACAGCCCAGCTGGGTTCAGCAGTGACCTGACAGAAGCTGAGACGGTGCAGGTGTCCTGCAGCTACTCCCAGCCAGCTGCCCAGTGAGGCCCACCGCCTCCCACCACACCTGCCACCTGTTCCTGGCCTCCACTGCCCCAGGACTGAAGTGGGTACCTGCCTCCTGTACACTGGAGCAAGGACCAAGAGGAAATGGCATCTTCAGAGGATTACTGTGGGCCATTTCCCTTTCGCAGTTCTTTCAATAGGCCCAGTTCTTCCAAATGGAAAAAGAAAGGTCTGGAAGAGGCCCACAGAGTTGCACAGGCGTGGGGGTAGGATGGGGGCTCCCAGCTGCTTGTGGAGGATGTAATATATACAGACACACACATGTTTTTCACACAGGCCTGGCCCACGCATCGACATGTGTGAATTTGCACACCACTGCCTGAATTGGAGCCCCCCAGAGTGTCCCTCTACCCAGAGTTTTTATTTCTTTAATTAGTCTGAGTGTTCCCAGCCATCTGCTCCTTAATCCCTGGAGAGGAACAGAGCCAACTGGACACAGCGTTGGTCTCTGTTTGGAATCACTGTGAGGTCTCCAGAAGGACCTGGCCGCCAGCCCCTTCATCACCATCTCCATCATTCAGCTGGTCATCTGGTGGCCCAAAGGTCACCCAAAGAGTCAGCAATCAGCATGTCCCTAGAAGCCAAATGCACTGCCTTTCTCTGTCCCCATGACTGTCCCCCACTCTGCACCCCAAATGGGAAGCATACGGTCTGAATAAATCCAAGTTTTATTCTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168334-XIRP1:NM_001198621:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.640 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.3),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4)
A:
NA
C2:
PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.8),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9),PF080437=Xin=WD(100=0.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCAACATAAGGCCTGGGG
R:
GTGTTCTCTTTGCCCCACCTC
Band lengths:
358-785
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)