MmuINT0176620 @ mm10
Intron Retention
Gene
ENSMUSG00000079243 | Xirp1
Description
xin actin-binding repeat containing 1 [Source:MGI Symbol;Acc:MGI:1333878]
Coordinates
chr9:120013755-120019819:-
Coord C1 exon
chr9:120016426-120019819
Coord A exon
chr9:120016035-120016425
Coord C2 exon
chr9:120013755-120016034
Length
391 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
TCCCCCTCCTACTCTCCCAGCTG
3' ss Score
8.5
Exon sequences
Seq C1 exon
AAGGATGGCTGATGCCCAGATGCAGGTAGCTCCTACACCAACCATCCAAATGAGGACAGAAGAGGACCTGTCCCTCCCTCATCCCTCAGCCCCAGAGGGTCTGCCGCCACCACCCCCCAAAGAAACCTTCTCCAAGTTCCAGCAGCAGCGGCAAGCCAGTGAGCTCCGGCGTCTCTACAAACACATCCACCCTGAGCTTCGGAAGAACCTCGAGGAGGCTGTGGCTGAGGACCTGGCGGAGGTCCTCGGTTCGGAGGAGCCCACTGAGGGCGATGTTCAGTGTATGCGCTGGATCTTTGAGAACTGGCGGCTAGATGCCATTGGCGATCACGAGAGGCCGGCTGCCAGGGAACCTGTGTCAGGTGGCAACGTCCAGGCCACCTCTCGAAAGTTTGAGGAAGGCTCCTTTACCAACAGCTCAGATCAGGAGCCGGAGGGACTCCGGCCATCAGGGGGTGATGTCCAAGCTGCCAGACAGATGTTTGAGACCAAGCCACTGGATGCGCTGAGAGGCCAGGAGGAGGCAACACAGACAACCATGAGGGAACCTGCAGCCACTGGAGATGTACAGGGAACCAGAAAGCTCTTTGAGACTAGGCCCCTGGACCGACTGGGCTCCCGCCCCTCTATCCAGGAGCAGAGTCCTTTAGAGCTGCGCTCAGAGATTCAGGAGCTGAAGGGCGATGTGAAGAAGACGGTGAAGCTGTTTCAGACGGAACCTCTATGCGCCATCCAGGATGCCGAGGGCACCATCCACGAAGTCAAGGCTGCCTGTCGGGAGGAGATTCAAAGCAATGCAGTGAGGTCTGCTCGCTGGCTCTTTGAGACCCGACCTCTGGATGCCTTCAACCAGGACCCCAGCCAGGTGCGGGTGATTCGGGGGATCTCCCTTGAGGAGGGAGCCCTGCCGGATGTCAGTGCAACTCGTTGGATCTTTGAGACGCAGCCTTTGGATGCCATTCGTGAGATCGAGGTGGACGAGAAGGACTTCCAGCCATCTCCGGATCTCATCCCTCCTGGCCCAGATGTTCAGCATCAGCGACATCTGTTTGAAACCTGTTCCCTGGACACTCTGAAGGGTGAAAGAGAAACAGAGGCAGAGGTGCCACCCAAGGAGGAGGTGATTCCTGGCGATGTCCGCTCTACACTCTGGCTATTTGAAACAAAACCCCTGGATGCTTTCAGAGACCAGGTCCAAGTGGGTCACCTGCAACGGGTGGGTCACCAGGAGGGTGAGGGGCTTGTGACAGAGTGTCTACCCAGTAATGGTACTTCGGTGTTGCCTCTGTCTCAGGGTGTCCCCCAGAATGATGGGTTGAAAGGGGATGTGAAAACCTTCAAGAATCTTTTTGAGACCCTTCCCTTAGACAGCATTGGGCAGGGTGAGCCTTCAGCCTATGGGAACATAAACAGAGGACAAAACACTGATTCTGCCGAGCAGTCCCAGGGTTCTGACGCCCCGGTATATGCTATGCAGGACAGCAGGGGACAGCTTCATGCCCTGACTTCTGTCAGCAGAGAGCAGGTAGTTGGAGGTGATGTTCAGGGCTACAAGTGGATGTTTGAGACACAGCCCCTGGACACGCTGGGTAGAAGCCCCAGTACCATCGATGTGGTACGAGGTATCACTCGGCAGGAAGTGGTGGCTGGGGATGTCGGCACCACTCGGTGGCTCTTTGAGACGCAGCCATTGGAGATGATCCACCAACAAGAGCAACAGAAACCAGAGGAGGAAGAGGGGAAGGGTCCAGGAGGCCCCCCCCCTGAGCTCCCCAAAAAGGGTGATGTACAGACTATCCGTTGGCTGTTTGAGACCTACCCTATGAGCGAGTTGGCAGAGAAGCGAGAATCTGAGGTCACAGACCCCGTGAGCAAGGCTGAGACACAGTCCTGCACCTGGATGTTTGGGCCCCAATCTCTGAACCCAGCAGAAGGCTCTGGGGAGCAGCACCTGCAAACCAGCCAGGTTCCGGCTGGAGACAGGCAGACAGACAGACATGTCTTTGAGACTGAATCTCTGCCAGCCTCAAACCAATCCAGTGGGAGAAAGCCTGTAAGGTACTGCAGCCGGGTGGAGATTCCTTCCGGGCAGGTATCTCGGCAGAAAGAGGTTTTCCAGGCCCTGGAGGCGGGCAAGAAGGAGGTCCCGGAGACCACAATCAACCTGGGGTCCATCCCCACAGGCTCTGTGCATAAATTCACCTGGCTCTTTGAAAACTGTCCCATGGGCTCCCTGGCAGCTGAGAGCATCAGAGGGGACAACCTCCAGGAAGAACAGCCAAAAGGCTCTGCAGGCCATGGGACACCAGAGAGGCAGGAGACAGCAGCCGAGAGAACCCTTCGGACTTTGCATGCCACCCCCGGCATCCTGCACCATGGAGGCATCCTCATGGAGGCCCGAGGGCCAGGGGAGCTCTGTCTTGCCAAGTATGTGCTCCCAAGCCCAGGGCAGGGGCGCCCCTACATACGGAAGGAGGAGCTGGTGTGTGGTGAGCTTCCCAGGATCGTCCGTCAAGTGCTGCGCCGGACAGACGTGGACCAGCAGGGACTGCTGGTTCAGGAGGACACAGCTGGGCAGCTCCAGCTCCACCCACTCACGCTGCCAGGGCCTGGTGACCCTGGGAATATTGAAGACATGGACCCTGAGCTCCAGCAGCTGCTGGCCTGTGGCCTGGGAGTCTCTGTGTCAAAGACGGGGCTGGTGATGCAAGAGACAGGACAGGGCCTAGTGGCACTGACTGCCTACTCCCTCCAGCCCCAGCTTACCAGCAGGGCCCCTGAAAGAAGCAGTGTGCAGCTGCTGGCCAGCTGCATAGACAAAGGAGACCTGCACAGCCTTCACAGTTTGCGGTGGGAGCCGCCAACAGACCCAAGTTCTGGACCTGCTACTGAGGAGTCCCAGAGGGTCCCCCAAACTGAGAGCATCATACATGTTACCCCATTAGACTCCACCATGGAGATGGGGCAGCTGAGAATCTCAGGATCCACACCCTGCCCACCTCCATCTCGGGCAGCTGGAAAAGTGGTCCTTCCAAATGGGAAACCTGTAGCCCAAGCTCCATTGCAGGAAGCAAGGAAGAAAACGGATATCAGCCATGCTGGGCAGAAAGGGAAGGCAGCCTCAGGAAGACCAGAAGGAACCATTGCTTCCCCTCTAGGGTCTGGGGCTCCAGATCTCCAGGAAGCCATGCAGAATCTGCGTTTGGCAACCGCTGAGGCCCAAAGCCTGCACCAGCAGGTTCTGAGCAGGCATCCACAGGGCTCTGACCCTGTAGCCACCTCCATGCCTGTCCAAGATGTTCTGCAAGCATCCACTCCTGCCACTGGGGTTACTCAAGGCAGCATCAGGCCTGTGGCTGGAAGTGAAGCCAGGATCCCAGCATTCCCCAGAAAG
Seq A exon
GTCAGTGGGGACAACAAAGCAGTCCCCAGAGGGCTGCCTAGGGGGTGGGTGACCATACAGGATGGCATCTACGCTGCTCACCCTGTGAGAACCTCTGACCCACATGGGGCTATCCAGCCTTCTGAAAAAGAGCCCCATCTGAGGCACAGCCCACCCCAGGCAGACCAAGGTCAGAGTCCCAGGCCGGGGTATCGTGAGCCTGGGGGTCATACACAAAGGGCTTGGGAACCTCTGGGGAAAGTGATGCCCCAAATCTCGCTTGAGTGCCTCCGGGCAGCAGACACCTCCCTGAAGACTGCCCCTCTAACTCACCACACCCTGACATCTAAACCAGCAGGTGCCAGCCTGCACTCCCATAATGCCTCTGTTCCTCCCCCTCCTACTCTCCCAG
Seq C2 exon
CTGCTGTGACAGAAGATCCTGACCACCCAACTCAAGGCCACCACCAGGAGGACTCCATCCAGCAGGCCCCGGAGCCCCTGCAGGAACCCCTTCTTCATATTCACAACAGACCTTCTGGCCAGAAAACCCCTGAAGGGTCAGAGACAAAACCCTCCAAAGCGGAATCCACCATGCTTCCAAGAAAGAAACCCCCAGTGCCTCCCAAACCTGCACATCTAAGCCAAATCCACCCACCTCAGAGGCTGCCCAAGCCCTTAGCAGGCTCTGCCAGAGCCTCAGAAGCAGGACAAGACCATAAGCCAGGTGAGCCAGGTATAGCCAACCCAGGGTCAGACAAAGCTCCCACAATAGCAGGCCAGGACTGCCTGCCTCTGGCTGAAAGCTCCAAGGGCCAGAAGCAACCTGCTCATCAGCGTCCACTCAGCTCTATGGCTTCCAGGCCTAGCAGGGGTCAGATAACCAGCAGCAACAGCCAGAGCCCCGAGTCTCCTAAGTTGAACGTTCTCAACAATGACTCCAGCCCACCACAAAAGCACAATAGCTCCCCCCAAAAGCAGGGGACCCCTGAGAGTCCACAGGGCAGCCATCAGGAGCTCCAGGGCCTCCTGAGCCAAGTGCAAACCCTGGAGAAGGAAGCATCTCGCAGCGTGGATGTGCAGGCCCTGCGGAAGCTCTTCGAGGGCGTACCCCAGCTGGGAGGGGGAGTCCCTCAGGCTCCCACTGCCCCCCACATGACTGAGGCCTCCATGGAGCAGGCCTTTGGGGAACTGACTCGGGTGAGTACAGAGGTTGCCCAGCTGAAAGAACAGACCCTAGCCAGGCTGCTGGACATCGAAGAAGCAGTGCACAAGGCTCTTAGCTCCATGTCTAGCCTCCAGTCTGAGGCTCCCACAAGCAGCCATCCACAGGGAACTACAAAAGATCCCAGTGTGAACAAGGTCTCAGTCAGTAGCAGAGCCATACAGACAAGCTCCAGCCAGGTCAGAGATCCACCCCTCGTCAAAACCCAAGAAAAGGCCGAGAGCCATCCTGAGGACAAGATGAGAAATCACGCAGAGGCCAGAGGCCAGGCAGCAGTGAACGTCCTGCCCTCCAGGAGGCTGGAGACACTGAGAGGAGCCGAGCCTGGCCTCCTACAAGTCTCTCCTCCCTGCACAGGATCCTCCTCTCCAACTTTCATCTCAGTCCAATCAGCTACAAAGAAGCTTCCGGAAGCTTCTAGCCCTCAGGGAAGCCATTATATCTCAGGGAAAAATACACACCTAGGTCAGGACATAGGTCAAGCCCTGCTCTACCAGAGAGATATCCAGGATCAGGCTGGGACAAAGGAGATGTGCATCGAGGGCGCTGTGCTCACAGGGCAGCCAAAGAATGTTCTGGAATTCCAGACTGGGTCAACTACCTCCAAGTCCTATGGAGCCATGAGAACAGTGACCGAGCAGTATGAGGAGATGGACCAATTTGGGAATACAGTCCTCACTTCCTCCACCACCATCACCCAGCACGCAGACCCACTGACGGACCCCAGACCCCAGCTCTGCCTGCACACTTCTCCCATGCTAAGGCAGTTACTCCACAGCCCCTCCAGGCTCAACAGTGACCTGGCAGAAGCTGAGATAACATGGACTCCCTGTAACAACTTCCACCCGGCTGCCCAGTGAGCCCCTCTGTCTCCCACCAGTCTTGGGTACCTCTCCCAGAGCTCCCCCAGGACTGAGTCATGGGCCTACCTCCAGCACATGTGGAACAAGGACCAAGAAAAAAACGTGGCCTTCAGAGAGCTCACGAGGGCTGTTTGCCTTGTTAGTTCTTGGAAAAGAGGCAAGAAACATAAAGCAGCCATCCACAGGAAAGCCGGATGGGAGGGACAGGACCTGACAGGTGCTTGTGGAGAACTAGCCCACACTAGCCCAGCTCACACTCACACATGTGAGCCTGCACCTCATTGCCTAGAGCTGGAGGGTCACCCTGCACTGTGTCCCTCCATAGCCAGCCTTTTTCTTTGGTTATGGAATCTGGCTGCCTTAATCCCTGGTGAGGACCCGGGGCTGAGCAAACTGGACATGACACTGCTCTCTGTTTGAGATTGGACTAAAGGCTCCAGAAAAACCCGGGTGCCTGCCTCTTCATCGCCAGTGGTCCAAAGGGCGCAGAGAGCGCACTAGCAGTCAATAGTGTTCCGAGAAGCTGAATACACGACCCTTCCTGACCCCATCACCCCCACTCTGCACCCCGAATGGGAAAAAATGACCCAAAAATAAACCCAAAAGAGATTCCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079243:ENSMUST00000111635:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.675 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.3),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGATCTCCAGGAAGCCA
R:
CTGGCCAGAAGGTCTGTTGTG
Band lengths:
349-740
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types