RnoINT0166117 @ rn6
Intron Retention
Gene
ENSRNOG00000037085 | Xirp1
Description
xin actin-binding repeat containing 1 [Source:NCBI gene;Acc:100910104]
Coordinates
chr8:128702133-128708273:-
Coord C1 exon
chr8:128704895-128708273
Coord A exon
chr8:128704507-128704894
Coord C2 exon
chr8:128702133-128704506
Length
388 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
CTCTCCTCCTACTCTCCCAGCTG
3' ss Score
8.53
Exon sequences
Seq C1 exon
AAGGATGGCCGATGCCCAGATGCAGGTAGTTCATACACCAACCATCCAAATGAGGACTGGAGAGGACCTGCCCCTTCCCCCTCCCTCAGCCCTAGAGGGTCTGCCGCCACCGCCCCCCAAAGAATCTTTCTCCAAGTTCCAGCAGCAGCGGCAAGCCAACGAGCTTCGCCGTCTCTACAAACACATCCACCCTGAGCTTCGGAAGAACCTCGAGGAGGCTGTAGCCGAGGACCTGGCCAAGGTACTCGGTTCGGAGGAGCCCACCGAGGGCGATGTGCAATGTATGCGCTGGATCTTTGAGAACTGGAGTTTGGATGCCATTGGCGACCACGAGAGGCCAGCTGGCAAGGAGCCTGTGTCAGGTGGCAACGTTCAGGCCACCTCTCGGAAGTTTGAGGAAGGCTCCTTTACCAACAGCTCAGATCTGGAGCCAGGACCCCAGCTGTCAGGGGGTGACGTCCGAGCTACCAGACAGCTGTTTGAGACCAAGTCACTGGATGCACTGACAGGCCAGGAAGAGGCAACACAGATGACCATGAAGGAACCTGCAGTCTCTGGAGATGTACAGGGAACCAGAAAACTCTTTGAGACTAAGCCCCTCGACATGCTGGGCTCCTGCCCCTCTATCCAGGACCAGAGCCCTTTAGAGCTGCGCTCAGAGATTCAGGAGCTGAAGGGTGATGTGAAGAAGACGGTGAAGCTGTTTCAGACGGAGCCTCTATGTGCCATCCAGGATGCAGAGGGCGCCATCCATGAAGTCAAGGCTGCCTGTCGGGAGGAGATCCAGAGCAATGCAGTGAGGTCAGCTCGCTGGCTCTTTGAGACCCGACCTCTGGACGCCTTCAACCAGGACCCCAGCCAGGTGAGGGTGATTCGGGGGATCTCCCTCGAGGAGGGAGCCCTGCCCGACGTCAGTGCAACTCGCTGGATCTTCGAGACGCAGCCTCTGGATGCCATTCGTGAGATCTTGGTGGACGAGAAGGACTTCCAGCCATCTCCAGATCTCATCCCTCCTGGTCCAGACGTTCAGCATCAGCGACATCTGTTTGAGACCTGCGCCCTGGACACTCTGAAGGGAGAAAGAGAAACCGAGGCAGAGGCTCCAGCCAAGGAGGAGGTGATTCCTGGTGACGTCCGCTCTACACTCTGGCTGTTTGAAACAAAACCCCTGGATGCTTTCAGAGACCAGGTCCAAGTGGGTCACCTGCAACGGGTGGATCACCAGAAGGGTGAGGGGCCTGTGATAGAGTGTCTGTCCAGTAACGGCACTTCAGCGCTGCCTCTGTCTCAGGGTGTCCCCCAGAACAATGGGCCGAAAGGGGATGTGAAAACCTTCAAGAATCTTTTTGAGACCCTTCCCTTAGACAGCATTGGGCAGGGTGAGCCTTCAGCCTGTGGAAACATAAACAGAGGACAAAGGACTGATTCTACTGGGCTGTCCGAGGGCGCCGATGCCCCCGTATATGCTATGCAGGACAGCAGAGGACAGCTTCATGCCCTGACTTCTGTCAGCAGAGAGCAGGTAGTTGGAGGTGATGTACAAGGCTACAAGTGGATGTTTGAGACACAGCCCCTGGACCGGCTGGGCAGAAGCCCCAGTACCGTGGATGTGGTGCGAGGCATCACCCGGCAAGAAGTGGTGGCTGGGGATGTAGGCACCACTCGGTGGCTCTTTGAGACGCAACCACTGGAGATGATCCACCAACAAGAGCAGCAGAAGCGAGAGGAGGAGGAGGGGAGGGGTCCAGGAGGCCCCCCTCCTGAGCTCCCCCAGAAGGGCGATGTACAAACCATCCGCTGGCTATTTGAGACCTACCCTATGAGCGAGTTGGCAGAGAAGCAGGAATCTGAGGTCACAGGCCCTGTGAGCAAGGCAGAGGCACAGTCATGCACCTGGATGTTTGGGTCCCAATCTCTGAACCAGGCAGAGGGCTCTGGGGAGCAGCACTTGCAAACCAGCCAGGTCCAGGCTGGAGACAGACAGACAGACAGCCATGTCTTTGAGACTGAATCTCTGTCAGCCCAGGGCCAGTCCAGTGGGAGAAAGCCTGTAAGGTACTGCAGCCGAGTGGAGATTCCTTCCGGGCAGGTATCTCGGCAGAAAGAAGTTTTCCAAGCCCTGGAAGCAGGCAAGAGGGGGGTACAGGAGACTGTTTTAAGCCCCGGATCCATCCCCACAGGCTCCGTGCATAAATTCACCTGGCTCTTTGAAAACTGCCCCATGGGCTCCCTGGCAGCAGAGAGTGTCAGTGGGGGCAACCTCCAGGAAGAACAGCCCAAAGTCTCTGCAGACCCTGGGACCCCAGAGAGGCAGGAGACAGCAGCCGAGAGAACCCTTCGGACTTTGCATGCCACCCCTGGCATCCTGCACCACGGAGGGATCCTCATGGAAGCCCGAGGGCCAGGGGAGCTCTGCCTTGCCAAGTATGTGCTCCCAAGCCCAGGGCAGGGGCGCCCCTGTGTACAGAAGGAGGAGCTGGTGTGCGGTGAGCTCCCCAGGATCGTCCGTCAAGTGCTGGGCCGGACAGATGTGGACCAGCAGGGACTGCTGGTTCAGGAGGACACAGCTGGCCAACTCCGACTCCACCCACTCAAACTGCCAGGGCCTGGTGACCCTGAGAATATTGAAGACATGGACCCGGAGCTCCAGCAGCTGCTGGCCTGTGGCCTGGGAGTCTCTATGGCAAAGACGGGGCTGGTGATGCAAGAAACAGGACAGGGCCTAGTGGCATTGACTGCCTACTCCCTCCAGCCCCAGCCAACCAGCAGGGGCCCTGAAAGAAGCAGTGTGCAGCTGCTGGCCAGCTGCATAGACAAAGGAGAACTGCACAGCCTTCCCAGTTTGCGGTGGGAGCCGCCAACAGACTCAAGTTCAGTACCAGTTACTGAGGAGACCCAGAGGCTTCCCCCAACTGAGAGCATCATACGCGTCACCCCATTAGACTCCACCATGAAGATGGGGCATCTGAGAGTCTCAGGATCCACACCCTGCCCACCTCTACCTCGGGCAGCTGGAAAAGTGGTCCTTCCAAATGGGAGACCGGGAGCACCATTGCAGGAAGCAAGGAAGCAAGTGGATATCAGCCATGCTGGGCAGAAAGGGAAGGCAGCCTCAGGAAGACCAGAAGGAACCATTGCTCCTCCTTTAGGGTCTGGGGCTCCAAATCTCCAGGAGGCCATGCAAAATCTGCGTTTGGCAACTGCTGAGGCCCAAAGCCTGCACCAGCAGGTTCTGAGCAGGCATGCACAGGGCTCTGACCCTGCAGCCACCTCCATATCTGCTCAAGATGTTCTGCAAGTGCCGACTCCTACCACTACCCAAGGTAGCATCATGCCTGTGGCTGGAAGGGACGCCAGGATCACAGCGGTCCCCAGAAAG
Seq A exon
GTCAGTGGAGACAACAAAGCAGTCCCCAGAGGGCTGCCTAGGGGGCGGGTGACCATACAGGATGGTATCTATGCTGCTCACCCTGTGAGAACCTCTGACCTACCTGGGGCCATCCAGCCTTCTGAAAAAGAACCCCAGCCAAGGGACAGCCCACCCCAGGCAGACCAAGGTCAGAGTCCCAGGCCAGAATATCACGAGCCTGGGGGTCACTCACAAAGGGCTTGGGGACCTCTGGGGAAAGTGATGCCACAAATCTGGCCTGAGTGCCTCCAGGCAGCAGACACCTCCCTGAAGACTGTCCCTCTAACTCACCACACTCTGACACCTAAACCCCAGGCTGCAGGTGACAGCCTGCACTCCCATAATGCCTCTCCTCCTACTCTCCCAG
Seq C2 exon
CTGCTGTGACAGAAGAACCAGACCACCCAGCTCAAGGCCACCACCAGAAGGACTCCGTCCAGCAGGCCTCCAAGCCCCTGCGGGAACCCCTTCTTCACAGTCACAACAGACCTGCTGGCCAGAAAACCCTTGAAGGGTCAGAGACAAAGCTCTCTAAAGCGGAATCCACTGTGCTTCCAAGAAAGAAACCCCCAGTGCCTCCGAAACCTGCCCATCTAAGCCAAGTCCACCCACCTCATAGGCTGCCCAAGCCCTTAGCAGCCTCTGCCAGCATCTCAGAAGCAGGACAAGACCATAAGCCAGGTGAGCCAGGTGTAGCCAACCCTGGGTCGGCCAAAGCTCCCACAATAGCAGGTCAGGGCTGCCTGCCCCTGGCTGAGTGCTCCAAGGGGCAGAAACAGCCTATGCGCCAGTATCCACTCAGCACCACAGCTTCCAGACCTAGCGGGGGCCAAACAAGCAACAGCAACAGCCAGAGCCCTGAGTCTCGCAAGTTGACCATTCTCAACAATGACAATGACGTCAGCCCACCACAAAAGCACCCTAGCTCCCCAAAACAGCAGCCTATGGATGGTTCCAAGCAGAGGACCCCTGAGAGCCCAGAGATTGTTCAGGGCAGCCATCAAGAGCTCCAGGGCCTCCTGAGCCAAGTGCAAACCCTGGAGAAGGAAGCAGCCCACACCGTGAATGTGCAGACCCTGCGGAAGCTCTTTGAGGGTGCACCCCAGCTGGCAGGGGGTACCCGTCAGGTTCCCACAGCTCCTCACAAGACTGAGGTCTCAGTGGAGCAGGCCTTTGGGGAGCTAACTCGGGTGAGTTCAAAGGTTGCCCAGCTGAAAGAACAGACCCTAGCCAGGCTGCTGGACATCGAAGAAACAGTGCACAAGGCTCTGAGCTCCATATTTAGCTTCCAGTCCGAGGGTCACACAAGCAGCCCTCCACAGGGAAGTGCAAAGGATCTCGGTGTGAAAAAGGTCTCCACCAGTAACAGAGCCAGACCGATGGGCTCCAACCAGGTCAAAGAGCCACCTGCAGTCGAAAACCAAGAAAAGGTTGAGAGCCGTCCTGAGGCGCAAGGTCAAGATGAGATTAGAAATCATGCAGAGGCCAGAGGTCAGGCAGCAGTGAATGTCCTGCCCTCCAGGAGGCTGGAGACGGCAAGAGCCGAGCCTGGCCTCCAACAAGTCTCACCTTCCTGCAGGGGATCCTCCTCTCCAACTTTCATCTCTATCCAATCAGCTGCAAAGACGCTTCTAGATGCTTCCAGCCCTCAGGGAAGCCATTCTATCTCAGGGAAAAATACACACCTAGCTCAGGACATAAGCCAAGCCCTGCTCTACCAGAGAGATATCCAGGATCAGGCTGGGACAAAGGAGATGGCCATCAAGGGCTCTGTGCCCACAGGGCAGCAAGAGAATGTTCTGGAATTCCAGACTGGGTCTGCTACCTCCAAGTCCTATGGAGCCACGAAAACAGTGACTGAACAGTATGAGGAGATGGACCAATTTGGGAATACAGTCCTCACTTCCTCCACCACCATCACCCAGCAGGCAGAGCCTCTGATGGACCCCAGGCCCCAACTCGGGCTCTACACTTTTCCCATGCTAAGGCAGTTCCTCCACAGTCCCTCCAGGTTCAACAGCGACCTGGCTGGTGCCGAGATACCATGGGTTCCCTGTAGCCACTTCCATCCGGCTGCCCAGTGAGCCCCTCTGTCTCCCCCCAGTCTTGGGTTCCTCCCCCAGAGCTCTAGGACTGAGTCACGGGCCTACCTCCAGGACATGTGGAACAATGACCAAGAAAAACGGGGCCTTCGGAGAGCTGATGAGGGCTGTTTGCCTTGTTCGTTCCAATTCTTGGGAAGGGACAAGAAAAGTAAAGCAGCCATCCACAGGAAAGCTGGATGGGTAGGACAGGACCTGACAGGTGGTTGTGGAGATCTAGCCCACACTAGCCCAGCTCACATTCGCACATTCGAGTCTGCATCTTATTGCCTAGAGCTGGATAGACACCCCTCCACTGTGTCCCTCTATGGCCAGCCTTTCTCTTAGGTTATGGAATGTGGCTACCTCAATCCCTGGTGAGGACCCGGGGCTGAGCAGACTGGACATGACATTGGTCTCTATTTGAGATTGGACTGAAGGTTCCAGAAAAACCTGGGTGCTGCCTCTTCATCACCAGTGGTCCAAAGGGCACTGAGAGAACGCTAGCAGCCAATAGTGTTCCTAGCAGCCGAATACACCACCCTTCCTGATCCCATCACCCCCCCACTCTGCACCCCCAATGGGAAAAATGACCCAAAAATAAACCCAAAAGAGATTCTCTGCTCTGTGTGTCAGACTGTGTATGTGCTGCCCCAGAGTCTGCATTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000037085:ENSRNOT00000055888:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.634 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.3),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4),PF080437=Xin=WD(100=1.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGGTAGCATCATGCCTG
R:
GCTTCTGAGATGCTGGCAGAG
Band lengths:
345-733
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]