HsaINT0184451 @ hg19
Intron Retention
Gene
ENSG00000146839 | ZAN
Description
zonadhesin [Source:HGNC Symbol;Acc:12857]
Coordinates
chr7:100369467-100371116:+
Coord C1 exon
chr7:100369467-100369643
Coord A exon
chr7:100369644-100370907
Coord C2 exon
chr7:100370908-100371116
Length
1264 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
AATGCTCTCATTTTCTTTAGCTA
3' ss Score
8.02
Exon sequences
Seq C1 exon
GACCCTTCTCTCAATGTCACCAGGTGGTGCCTCCCCAGTCCAGCTTTGCCAGTTGCGTGCATGGTCAGTGTGGGACCAAGGGCGACACCACAGCCCTGTGCCGCTCCCTGCAGGCCTACGCGTCCCTGTGTGCCCAGGCTGGCCAGGCCCCTGCCTGGCGGAACAGAACCTTCTGCC
Seq A exon
GTGAGTGACTGGCCACCTGTTCCCACAGCCCATAGGCACCCTCCAGAATTCTGCCCTCCCTTTCTTCCTCTAAATTCTTTTTTTTTTTTTTGAGACGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAACCTCTACCTCCTGTGTTCAAGCCAAGATGGGTGAATCACCTGAGGTCAGGAGTTGGAGACCAGCCTGGTCAACATGGTGAAACCCCGTCTCTATTAAAAATACAAAACTTGGCCAGGTGTGGTGGCAAGCACCTGTAATCAGCTACTCAAGAGGCTGAGGTGGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATCACACCACTGCACTCCAGCCTGGGCAACAAGAGTGAAACAAAAAACAAGAGTGAAAAACAAAACAAAACAAAAAGTTCTGGCAGTAGATGGTGGTAATGGCAGCACGACAATGTGACTGTACTTAGTGCTGTTGAAGTGTACATTTAAAAAATTGTTGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGAGAAACCCCGTCTCTACCAAAAATACAAAAAATTAGCCAGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAAGCAGGAGAATGGCGTGAATCTGGGAGGTGGAGCTTGCAGTGACCCAAGATCATGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTGTCTACAAGAAAAAAAAAATTGTTAAAATTGTAGATTTTATGTCTGTTTTTTTTTTGTTTGTTTTTTTTTTTTTTTGCTTTTGAGAGTCTCGCTGTCGCCCAGGCTGGAGTGCAGTGGTCTGACCTCGCCTCATTGCAACCTCTGCCTCTCAGGTTCAAGAGATTCTCGTGTCTCAGCCACCCAAGTAGCTGGGACTACAGGCGTGTGCCACCCCAAGTAGCTGGGACTACAGGCGTGTGCCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGTCGGTTTTTCACCATGTTGGCCAGCCTGTTCTCGAACTCCTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACATGTGCGAGCTACCGCTCCTGGCCACTACTAGGAGCTTTTGATGCCCCAAGGTTTGGGGGCTGGACATGCCACCCCACTCTTCCTAATGCTCTCATTTTCTTTAG
Seq C2 exon
CTATGAGGTGCCCACCTGGCAGCAGCTACAGCCCCTGCAGCAGCCCCTGCCCAGACACCTGCAGCAGCATAAACAACCCGAGGGACTGCCCCAAAGCACTGCCCTGTGCTGAGAGCTGTGAATGTCAGAAAGGCCACATCTTGAGTGGAACCTCCTGCGTGCCCCTTGGCCAGTGTGGCTGCACTGACCCAGCGGGCTCCTACCACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839-ZAN:NM_003386:29
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(78.7=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(36.4=83.3),PF127142=TILa=PU(46.8=91.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTCCAGCTTTGCCAGTTG
R:
GTGGTAGGAGCCCGCTGG
Band lengths:
349-1613
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)