BtaINT0163468 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003432 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr25:36378493-36380571:-
Coord C1 exon
chr25:36380395-36380571
Coord A exon
chr25:36378702-36380394
Coord C2 exon
chr25:36378493-36378701
Length
1693 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
ACATGCCAATCTCTTCTTAGCTC
3' ss Score
6.98
Exon sequences
Seq C1 exon
GACCCTTCTCCACATGCCACAGGGTGGTGTCCCCGCAGGCCAGCTTCGCCAGCTGTGTGTACGGCCAGTGTGGGACCAAGGGCGATGCCTTCACCCTGTGCCGCTCCCTGCAGGCCTACGCGTCCCTGTGTGCCCGTGCCGGCCAGGTCCTCACCTGGCGGAGCAGCACCTTCTGCC
Seq A exon
GTGAGTGACCTAGCGGAGTCCCCTGAGCCCCGCCCTCTCTCCTTCTCCCTCAGTTCTGCTCCTCCGCTCTCCCCTTCGCAGCCCGGCCCCCAGCCCCGATGTGGGACGCCCTCTGTCCCCCACTCTCCAGTCTCTCGGAGCCCAGCCCCCATCTTTCCCTCGACTCCCTCCGCTGAGAGACCCCGTCTGACTTTCACCTCACCAATGGCACTAGTGGGAAAGAACCTGCCTGTCAATGCAGGAGACGTAAAAGATGCAGGTCGGGACCTAAGAGACCTGGGTCAGAAGACCCCCTGGAGAAGGGCATGGCAACCCACCCCAGTATTCTTGCCTGGAGAATCCCCGTGGACAGAGCTATAGTCCATAGTGTCACAAAGAGTCAGACCTGAAGCGACTTACCAGCACCAAAAAGTTCTGACCTCATTTGGCTGCTCTCTCCTTCTCATCTTCCCCAGGTCACCCGTGTGATGACCTTTCTTCCTCTTTCCCAGGAACCCTTTTTGTTTTCTTTTAATTGTAGCAAAATATACAGAACACAAAAATTACCATTGTAACAAATTTTTAAGTGTCCAGTTCAGCAACATTAAGTGCATTCACCTTGTCATGCAACCATTATCACCATTGTTTCCAGAACTTTTTCTTCTTCCCGAACTGAAACTCTGTCCCCATTAAACACAGGTCCCCATCCCTCTCCCCCCAGCCCCTGGCAAGCATCATCTACTCTCTATCTCTATGCATCCGAGGACTCTAGAGACCTCATCTAAGTGAAATCACACAGTATTCATTTTTTTGTGACTAGCTTATCTTAGTATGACTTTCCTGGTGGCTCCGACAGTAAAGCGTCTGCCTACAATGCGGGAGACCTGAGTTCAATCCCTGGAGTGGGAAGATCTCTTGAAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGATGGAGGAACCTGGTAGACTACAGTCCATGGGGTTGCAAAGAGTCAGACATGACTGAGCGACTTCACCTTATCTTAGTATAATGTCCCCAAGGCTCACCCATGTTGCAGAGGGCACCAGGGTTTCCTTCTTTGTAAGGCTGAATCATATTCCATTGTGTGGACGGACCCCTTTTTATTCATCCGTTCAAGGAGCACTCTTGAAAAATTTATTTGTCCTGTATCGTTTGTAGGATCTTAGTTCCCCCGCCAGGGGTTGAACCTGTGCCCTCAGCCGTGAAAGCGAGGAGTCTTAACCACTGAACTGCCAGGGAATTCTCTCTTAGGAATTCTTTTTTTTTTTAATCCATTAAAAATATTTAATTTATTCATTTAATTTGGCTGTGCTGGGTCTTCGTGGCTGCGCACGTTCTTCTCTAGTTTCCGGGCTTGGGCTTCTCTTTGCGGTGGCTTCTCTCGTTGCAAAGCACGGGCTCTGGGCACGTGGGCTTCAGTAGTTGTAGTGGGTGGGCTCAGTAGTTGCGGCTCCCAGGCTCTGGAGCACAGGCTCAGTAGTTGTGGTGCACCGGCTTAATTGCTCGGCGGCATGTGGGGTCTTCCCGATCAGGGATAGAACCCATGTCTCCTGCATGGGCAGGCGGATTCTTAACCACTGGACCACCAGGGAAGCCCTTAGGAGCTCTTCAGGCCCCAAGGTCAAGAGAGCTGGAAATGACTCTTCCTTCCTACATGCCAATCTCTTCTTAG
Seq C2 exon
CTCTGAAGTGCCCGTCAGGCAGCAGATACAGCCCCTGCGCCGACCCCTGCCCGGGCACCTGTCTCAGCCTGAGCACCCCGTCGTACTGCCCGTCTTCACTGCCCTGTGCCGAGGGCTGTGAGTGTCAGAGAGGCCACATCCTGAGTGGGACCACCTGTGTGCCCCTCAGCGAGTGTGGCTGCACCAGCCCTGGGGGCGCCTACCACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003432:ENSBTAT00000044014:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(78.7=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.0),PF127142=TILa=PU(17.5=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCTCCACATGCCACAG
R:
GAGGGGCACACAGGTGGTC
Band lengths:
342-2035
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]